Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0444 and DvMF_0445 are separated by 180 nucleotides DvMF_0445 and DvMF_0446 are separated by 6 nucleotides DvMF_0446 and DvMF_0447 are separated by 299 nucleotides
DvMF_0444: DvMF_0444 - hypothetical protein (RefSeq), at 520,184 to 520,546
_0444
DvMF_0445: DvMF_0445 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 520,727 to 521,233
_0445
DvMF_0446: DvMF_0446 - putative glutamate synthase subunit beta (RefSeq), at 521,240 to 522,331
_0446
DvMF_0447: DvMF_0447 - amino acid-binding ACT domain protein (RefSeq), at 522,631 to 523,062
_0447
Position (kb) 521
522
523 Strain fitness (log2 ratio) -2
-1
0
1 at 520.906 kb on + strand, within DvMF_0445 at 521.055 kb on - strand, within DvMF_0445 at 521.122 kb on - strand, within DvMF_0445 at 521.317 kb on - strand at 521.323 kb on + strand at 521.898 kb on + strand, within DvMF_0446 at 521.906 kb on - strand, within DvMF_0446 at 521.906 kb on - strand, within DvMF_0446 at 522.000 kb on - strand, within DvMF_0446 at 522.165 kb on - strand, within DvMF_0446 at 522.179 kb on - strand, within DvMF_0446 at 522.321 kb on + strand at 522.534 kb on - strand at 522.792 kb on + strand, within DvMF_0447 at 522.818 kb on - strand, within DvMF_0447
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 520,906 + DvMF_0445 0.35 -1.5 521,055 - DvMF_0445 0.65 -0.6 521,122 - DvMF_0445 0.78 -1.3 521,317 - -0.7 521,323 + -2.4 521,898 + DvMF_0446 0.60 -0.1 521,906 - DvMF_0446 0.61 -1.7 521,906 - DvMF_0446 0.61 -1.2 522,000 - DvMF_0446 0.70 -1.3 522,165 - DvMF_0446 0.85 -0.7 522,179 - DvMF_0446 0.86 -1.4 522,321 + -0.8 522,534 - -1.2 522,792 + DvMF_0447 0.37 -0.4 522,818 - DvMF_0447 0.43 +1.2
Or see this region's nucleotide sequence