Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0327

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0326 and DvMF_0327 overlap by 8 nucleotidesDvMF_0327 and DvMF_0328 are separated by 295 nucleotides DvMF_0326: DvMF_0326 - hydrogenase, putative (RefSeq), at 380,501 to 381,592 _0326 DvMF_0327: DvMF_0327 - oxidoreductase FAD/NAD(P)-binding domain protein (RefSeq), at 381,585 to 382,472 _0327 DvMF_0328: DvMF_0328 - hypothetical protein (RefSeq), at 382,768 to 383,256 _0328 Position (kb) 381 382 383Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 380.780 kb on + strand, within DvMF_0326at 381.162 kb on + strand, within DvMF_0326at 381.421 kb on + strand, within DvMF_0326at 381.459 kb on + strand, within DvMF_0326at 381.485 kb on - strandat 381.601 kb on + strandat 381.622 kb on + strandat 381.627 kb on + strandat 381.630 kb on - strandat 381.910 kb on - strand, within DvMF_0327at 382.074 kb on + strand, within DvMF_0327at 382.198 kb on + strand, within DvMF_0327at 382.731 kb on - strandat 383.032 kb on + strand, within DvMF_0328at 383.318 kb on - strandat 383.470 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
380,780 + DvMF_0326 0.26 -2.4
381,162 + DvMF_0326 0.61 -4.2
381,421 + DvMF_0326 0.84 -2.1
381,459 + DvMF_0326 0.88 -0.8
381,485 - -1.8
381,601 + -1.9
381,622 + -2.3
381,627 + -3.8
381,630 - -2.3
381,910 - DvMF_0327 0.37 -1.2
382,074 + DvMF_0327 0.55 -3.0
382,198 + DvMF_0327 0.69 -1.7
382,731 - -0.3
383,032 + DvMF_0328 0.54 -0.2
383,318 - -0.5
383,470 + -0.3

Or see this region's nucleotide sequence