Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0324 and DvMF_0325 overlap by 13 nucleotides DvMF_0325 and DvMF_0326 overlap by 1 nucleotides
DvMF_0324: DvMF_0324 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 377,050 to 379,008
_0324
DvMF_0325: DvMF_0325 - methyl-viologen-reducing hydrogenase delta subunit (RefSeq), at 378,996 to 380,501
_0325
DvMF_0326: DvMF_0326 - hydrogenase, putative (RefSeq), at 380,501 to 381,592
_0326
Position (kb) 378
379
380
381 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 378.049 kb on - strand, within DvMF_0324 at 378.049 kb on - strand, within DvMF_0324 at 378.100 kb on - strand, within DvMF_0324 at 378.100 kb on - strand, within DvMF_0324 at 378.387 kb on - strand, within DvMF_0324 at 378.721 kb on - strand at 378.984 kb on + strand at 379.359 kb on + strand, within DvMF_0325 at 379.747 kb on + strand, within DvMF_0325 at 379.777 kb on + strand, within DvMF_0325 at 380.165 kb on + strand, within DvMF_0325 at 380.237 kb on + strand, within DvMF_0325 at 380.371 kb on + strand at 380.459 kb on - strand at 380.531 kb on + strand at 380.780 kb on + strand, within DvMF_0326 at 381.162 kb on + strand, within DvMF_0326 at 381.421 kb on + strand, within DvMF_0326 at 381.459 kb on + strand, within DvMF_0326 at 381.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 378,049 - DvMF_0324 0.51 -2.8 378,049 - DvMF_0324 0.51 -3.6 378,100 - DvMF_0324 0.54 -1.0 378,100 - DvMF_0324 0.54 -2.8 378,387 - DvMF_0324 0.68 +0.2 378,721 - +1.3 378,984 + -2.0 379,359 + DvMF_0325 0.24 -2.1 379,747 + DvMF_0325 0.50 -1.1 379,777 + DvMF_0325 0.52 -1.8 380,165 + DvMF_0325 0.78 -1.7 380,237 + DvMF_0325 0.82 -1.5 380,371 + -2.6 380,459 - -2.8 380,531 + -3.0 380,780 + DvMF_0326 0.26 -2.4 381,162 + DvMF_0326 0.61 -4.2 381,421 + DvMF_0326 0.84 -2.1 381,459 + DvMF_0326 0.88 -0.8 381,485 - -1.8
Or see this region's nucleotide sequence