Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0268 and DvMF_0269 are separated by 62 nucleotides DvMF_0269 and DvMF_0270 are separated by 334 nucleotides DvMF_0270 and DvMF_0271 are separated by 58 nucleotides
DvMF_0268: DvMF_0268 - hydrogenase assembly chaperone hypC/hupF (RefSeq), at 306,663 to 306,914
_0268
DvMF_0269: DvMF_0269 - hydrogenase expression/formation protein (RefSeq), at 306,977 to 307,483
_0269
DvMF_0270: DvMF_0270 - nickel-dependent hydrogenase large subunit (RefSeq), at 307,818 to 309,521
_0270
DvMF_0271: DvMF_0271 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 309,580 to 310,533
_0271
Position (kb) 307
308
309
310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 307.252 kb on + strand, within DvMF_0269 at 307.318 kb on - strand, within DvMF_0269 at 307.318 kb on - strand, within DvMF_0269 at 307.380 kb on + strand, within DvMF_0269 at 307.431 kb on + strand, within DvMF_0269 at 307.499 kb on - strand at 307.502 kb on - strand at 307.579 kb on + strand at 307.816 kb on + strand at 307.866 kb on - strand at 308.000 kb on + strand, within DvMF_0270 at 308.242 kb on + strand, within DvMF_0270 at 308.319 kb on - strand, within DvMF_0270 at 308.319 kb on - strand, within DvMF_0270 at 308.319 kb on - strand, within DvMF_0270 at 308.609 kb on - strand, within DvMF_0270 at 308.701 kb on - strand, within DvMF_0270 at 309.124 kb on - strand, within DvMF_0270 at 309.125 kb on - strand, within DvMF_0270 at 309.131 kb on + strand, within DvMF_0270 at 309.176 kb on + strand, within DvMF_0270 at 309.176 kb on + strand, within DvMF_0270 at 309.287 kb on + strand, within DvMF_0270 at 309.305 kb on - strand, within DvMF_0270 at 309.353 kb on + strand at 309.428 kb on + strand at 309.497 kb on - strand at 309.528 kb on + strand at 309.561 kb on + strand at 309.600 kb on - strand at 309.643 kb on - strand at 309.643 kb on - strand at 309.643 kb on - strand at 309.916 kb on + strand, within DvMF_0271 at 310.489 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 307,252 + DvMF_0269 0.54 -0.0 307,318 - DvMF_0269 0.67 -1.3 307,318 - DvMF_0269 0.67 -0.5 307,380 + DvMF_0269 0.79 -0.9 307,431 + DvMF_0269 0.90 -0.6 307,499 - -0.6 307,502 - -1.3 307,579 + -1.0 307,816 + -0.5 307,866 - -0.6 308,000 + DvMF_0270 0.11 +0.2 308,242 + DvMF_0270 0.25 -0.9 308,319 - DvMF_0270 0.29 -0.1 308,319 - DvMF_0270 0.29 -0.5 308,319 - DvMF_0270 0.29 -2.8 308,609 - DvMF_0270 0.46 -0.2 308,701 - DvMF_0270 0.52 +2.3 309,124 - DvMF_0270 0.77 -0.5 309,125 - DvMF_0270 0.77 -0.3 309,131 + DvMF_0270 0.77 -0.4 309,176 + DvMF_0270 0.80 +0.0 309,176 + DvMF_0270 0.80 -0.6 309,287 + DvMF_0270 0.86 +0.1 309,305 - DvMF_0270 0.87 -0.2 309,353 + -0.6 309,428 + -0.2 309,497 - -0.6 309,528 + -0.4 309,561 + +0.0 309,600 - -0.7 309,643 - -0.7 309,643 - -0.1 309,643 - -0.4 309,916 + DvMF_0271 0.35 -0.4 310,489 + -0.5
Or see this region's nucleotide sequence