Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0217 and DvMF_0218 are separated by 102 nucleotides DvMF_0218 and DvMF_0219 are separated by 317 nucleotides DvMF_0219 and DvMF_0220 are separated by 362 nucleotides
DvMF_0217: DvMF_0217 - Hpt protein (RefSeq), at 244,495 to 244,860
_0217
DvMF_0218: DvMF_0218 - hypothetical protein (RefSeq), at 244,963 to 245,226
_0218
DvMF_0219: DvMF_0219 - Peroxiredoxin (RefSeq), at 245,544 to 246,170
_0219
DvMF_0220: DvMF_0220 - hypothetical protein (RefSeq), at 246,533 to 247,135
_0220
Position (kb) 245
246
247 Strain fitness (log2 ratio) -2
-1
0
1
2 at 244.740 kb on + strand, within DvMF_0217 at 244.754 kb on - strand, within DvMF_0217 at 244.887 kb on + strand at 244.921 kb on + strand at 244.939 kb on - strand at 245.212 kb on - strand at 245.654 kb on + strand, within DvMF_0219 at 245.725 kb on + strand, within DvMF_0219 at 245.728 kb on - strand, within DvMF_0219 at 245.761 kb on + strand, within DvMF_0219 at 245.983 kb on - strand, within DvMF_0219 at 245.988 kb on + strand, within DvMF_0219 at 246.015 kb on - strand, within DvMF_0219 at 246.450 kb on - strand at 246.709 kb on + strand, within DvMF_0220 at 246.873 kb on - strand, within DvMF_0220
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 244,740 + DvMF_0217 0.67 +2.4 244,754 - DvMF_0217 0.71 +2.3 244,887 + -0.8 244,921 + -0.6 244,939 - -0.9 245,212 - -0.1 245,654 + DvMF_0219 0.18 -2.7 245,725 + DvMF_0219 0.29 -1.0 245,728 - DvMF_0219 0.29 -0.6 245,761 + DvMF_0219 0.35 -0.2 245,983 - DvMF_0219 0.70 -0.3 245,988 + DvMF_0219 0.71 -0.3 246,015 - DvMF_0219 0.75 +0.6 246,450 - -0.2 246,709 + DvMF_0220 0.29 -0.5 246,873 - DvMF_0220 0.56 -1.2
Or see this region's nucleotide sequence