Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0209 and DvMF_0210 are separated by 147 nucleotides DvMF_0210 and DvMF_0211 overlap by 4 nucleotides
DvMF_0209: DvMF_0209 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 229,450 to 230,418
_0209
DvMF_0210: DvMF_0210 - Extracellular ligand-binding receptor (RefSeq), at 230,566 to 232,344
_0210
DvMF_0211: DvMF_0211 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 232,341 to 235,571
_0211
Position (kb) 230
231
232
233 Strain fitness (log2 ratio) -1
0
1 at 229.590 kb on - strand, within DvMF_0209 at 229.737 kb on + strand, within DvMF_0209 at 229.766 kb on + strand, within DvMF_0209 at 229.806 kb on - strand, within DvMF_0209 at 230.125 kb on + strand, within DvMF_0209 at 230.396 kb on - strand at 230.406 kb on - strand at 230.592 kb on - strand at 230.634 kb on - strand at 230.855 kb on - strand, within DvMF_0210 at 230.986 kb on + strand, within DvMF_0210 at 231.100 kb on - strand, within DvMF_0210 at 231.156 kb on - strand, within DvMF_0210 at 231.315 kb on + strand, within DvMF_0210 at 231.628 kb on + strand, within DvMF_0210 at 231.717 kb on - strand, within DvMF_0210 at 231.901 kb on - strand, within DvMF_0210 at 231.929 kb on + strand, within DvMF_0210 at 231.983 kb on - strand, within DvMF_0210 at 232.610 kb on + strand at 232.631 kb on - strand at 232.768 kb on - strand, within DvMF_0211 at 232.864 kb on + strand, within DvMF_0211 at 232.929 kb on + strand, within DvMF_0211 at 232.942 kb on - strand, within DvMF_0211 at 233.019 kb on - strand, within DvMF_0211 at 233.106 kb on + strand, within DvMF_0211 at 233.134 kb on + strand, within DvMF_0211 at 233.147 kb on - strand, within DvMF_0211 at 233.170 kb on - strand, within DvMF_0211 at 233.218 kb on + strand, within DvMF_0211 at 233.226 kb on - strand, within DvMF_0211
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 229,590 - DvMF_0209 0.14 -1.2 229,737 + DvMF_0209 0.30 -0.5 229,766 + DvMF_0209 0.33 -0.6 229,806 - DvMF_0209 0.37 -0.3 230,125 + DvMF_0209 0.70 -0.6 230,396 - +0.2 230,406 - -0.4 230,592 - +0.6 230,634 - +1.3 230,855 - DvMF_0210 0.16 +0.1 230,986 + DvMF_0210 0.24 +0.3 231,100 - DvMF_0210 0.30 +1.6 231,156 - DvMF_0210 0.33 +0.6 231,315 + DvMF_0210 0.42 +0.3 231,628 + DvMF_0210 0.60 +0.7 231,717 - DvMF_0210 0.65 +0.7 231,901 - DvMF_0210 0.75 -0.5 231,929 + DvMF_0210 0.77 +0.2 231,983 - DvMF_0210 0.80 +0.9 232,610 + +0.9 232,631 - +1.1 232,768 - DvMF_0211 0.13 +1.2 232,864 + DvMF_0211 0.16 +0.6 232,929 + DvMF_0211 0.18 +0.7 232,942 - DvMF_0211 0.19 +0.8 233,019 - DvMF_0211 0.21 +1.0 233,106 + DvMF_0211 0.24 +0.3 233,134 + DvMF_0211 0.25 +0.8 233,147 - DvMF_0211 0.25 +0.7 233,170 - DvMF_0211 0.26 -1.7 233,218 + DvMF_0211 0.27 -0.1 233,226 - DvMF_0211 0.27 +0.6
Or see this region's nucleotide sequence