Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0208 and DvMF_0209 are separated by 30 nucleotides DvMF_0209 and DvMF_0210 are separated by 147 nucleotides
DvMF_0208: DvMF_0208 - EAL domain protein (RefSeq), at 227,131 to 229,419
_0208
DvMF_0209: DvMF_0209 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 229,450 to 230,418
_0209
DvMF_0210: DvMF_0210 - Extracellular ligand-binding receptor (RefSeq), at 230,566 to 232,344
_0210
Position (kb) 229
230
231 Strain fitness (log2 ratio) -1
0
1 at 228.526 kb on - strand, within DvMF_0208 at 228.578 kb on - strand, within DvMF_0208 at 228.720 kb on - strand, within DvMF_0208 at 229.152 kb on - strand, within DvMF_0208 at 229.191 kb on + strand at 229.199 kb on - strand at 229.342 kb on + strand at 229.455 kb on - strand at 229.525 kb on + strand at 229.543 kb on + strand at 229.590 kb on - strand, within DvMF_0209 at 229.737 kb on + strand, within DvMF_0209 at 229.766 kb on + strand, within DvMF_0209 at 229.806 kb on - strand, within DvMF_0209 at 230.125 kb on + strand, within DvMF_0209 at 230.396 kb on - strand at 230.406 kb on - strand at 230.592 kb on - strand at 230.634 kb on - strand at 230.855 kb on - strand, within DvMF_0210 at 230.986 kb on + strand, within DvMF_0210 at 231.100 kb on - strand, within DvMF_0210 at 231.156 kb on - strand, within DvMF_0210 at 231.315 kb on + strand, within DvMF_0210
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 228,526 - DvMF_0208 0.61 -0.4 228,578 - DvMF_0208 0.63 -0.4 228,720 - DvMF_0208 0.69 -1.5 229,152 - DvMF_0208 0.88 -1.4 229,191 + -1.0 229,199 - +0.4 229,342 + +1.4 229,455 - -1.0 229,525 + -0.3 229,543 + -1.5 229,590 - DvMF_0209 0.14 -1.2 229,737 + DvMF_0209 0.30 -0.5 229,766 + DvMF_0209 0.33 -0.6 229,806 - DvMF_0209 0.37 -0.3 230,125 + DvMF_0209 0.70 -0.6 230,396 - +0.2 230,406 - -0.4 230,592 - +0.6 230,634 - +1.3 230,855 - DvMF_0210 0.16 +0.1 230,986 + DvMF_0210 0.24 +0.3 231,100 - DvMF_0210 0.30 +1.6 231,156 - DvMF_0210 0.33 +0.6 231,315 + DvMF_0210 0.42 +0.3
Or see this region's nucleotide sequence