Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0181 and DvMF_0182 are separated by 250 nucleotides DvMF_0182 and DvMF_0183 are separated by 234 nucleotides DvMF_0183 and DvMF_0184 are separated by 132 nucleotides
DvMF_0181: DvMF_0181 - phosphoadenosine phosphosulfate reductase (RefSeq), at 198,695 to 199,423
_0181
DvMF_0182: DvMF_0182 - hypothetical protein (RefSeq), at 199,674 to 199,892
_0182
DvMF_0183: DvMF_0183 - Ferroxidase (RefSeq), at 200,127 to 200,642
_0183
DvMF_0184: DvMF_0184 - pyruvate flavodoxin/ferredoxin oxidoreductase domain protein (RefSeq), at 200,775 to 202,466
_0184
Position (kb) 199
200 Strain fitness (log2 ratio) -2
-1
0
1
2 at 198.720 kb on - strand at 198.743 kb on + strand at 198.757 kb on - strand at 198.850 kb on - strand, within DvMF_0181 at 198.980 kb on + strand, within DvMF_0181 at 198.993 kb on - strand, within DvMF_0181 at 199.101 kb on - strand, within DvMF_0181 at 199.134 kb on + strand, within DvMF_0181 at 199.179 kb on + strand, within DvMF_0181 at 199.179 kb on + strand, within DvMF_0181 at 199.260 kb on + strand, within DvMF_0181 at 199.260 kb on + strand, within DvMF_0181 at 199.268 kb on + strand, within DvMF_0181 at 199.733 kb on - strand, within DvMF_0182 at 199.912 kb on + strand at 199.933 kb on - strand at 200.114 kb on + strand at 200.201 kb on + strand, within DvMF_0183 at 200.279 kb on - strand, within DvMF_0183 at 200.571 kb on - strand, within DvMF_0183 at 200.609 kb on + strand at 200.795 kb on - strand at 200.856 kb on + strand at 200.872 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 198,720 - -0.6 198,743 + -0.9 198,757 - +2.5 198,850 - DvMF_0181 0.21 -0.4 198,980 + DvMF_0181 0.39 -0.5 198,993 - DvMF_0181 0.41 +0.2 199,101 - DvMF_0181 0.56 -0.3 199,134 + DvMF_0181 0.60 -0.4 199,179 + DvMF_0181 0.66 -0.8 199,179 + DvMF_0181 0.66 -1.1 199,260 + DvMF_0181 0.78 -0.5 199,260 + DvMF_0181 0.78 +2.1 199,268 + DvMF_0181 0.79 -0.2 199,733 - DvMF_0182 0.27 -0.9 199,912 + -0.3 199,933 - -0.7 200,114 + -0.8 200,201 + DvMF_0183 0.14 -0.3 200,279 - DvMF_0183 0.29 -0.5 200,571 - DvMF_0183 0.86 -2.4 200,609 + -0.4 200,795 - -0.6 200,856 + -0.6 200,872 + -0.6
Or see this region's nucleotide sequence