Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0176 and DvMF_0177 are separated by 485 nucleotides DvMF_0177 and DvMF_0178 are separated by 166 nucleotides DvMF_0178 and DvMF_0179 are separated by 300 nucleotides
DvMF_0176: DvMF_0176 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 192,376 to 192,900
_0176
DvMF_0177: DvMF_0177 - Lytic transglycosylase catalytic (RefSeq), at 193,386 to 194,675
_0177
DvMF_0178: DvMF_0178 - outer membrane chaperone Skp (OmpH) (RefSeq), at 194,842 to 195,351
_0178
DvMF_0179: DvMF_0179 - hypothetical protein (RefSeq), at 195,652 to 196,503
_0179
Position (kb) 193
194
195 Strain fitness (log2 ratio) -1
0
1 at 192.439 kb on + strand, within DvMF_0176 at 192.973 kb on + strand at 193.167 kb on - strand at 193.939 kb on + strand, within DvMF_0177 at 194.086 kb on + strand, within DvMF_0177 at 194.212 kb on + strand, within DvMF_0177 at 194.278 kb on + strand, within DvMF_0177 at 194.542 kb on - strand, within DvMF_0177 at 194.669 kb on + strand at 194.736 kb on - strand at 194.929 kb on + strand, within DvMF_0178 at 194.986 kb on - strand, within DvMF_0178 at 195.132 kb on + strand, within DvMF_0178 at 195.470 kb on + strand at 195.470 kb on + strand at 195.531 kb on - strand at 195.547 kb on + strand at 195.552 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 192,439 + DvMF_0176 0.12 -0.0 192,973 + -0.6 193,167 - -0.5 193,939 + DvMF_0177 0.43 -0.6 194,086 + DvMF_0177 0.54 +0.7 194,212 + DvMF_0177 0.64 -0.2 194,278 + DvMF_0177 0.69 -0.3 194,542 - DvMF_0177 0.90 -0.6 194,669 + +0.1 194,736 - -0.1 194,929 + DvMF_0178 0.17 -1.3 194,986 - DvMF_0178 0.28 -0.4 195,132 + DvMF_0178 0.57 -1.0 195,470 + -0.5 195,470 + -0.7 195,531 - -0.5 195,547 + -1.3 195,552 + +0.7
Or see this region's nucleotide sequence