Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0174 and DvMF_0175 are separated by 162 nucleotides DvMF_0175 and DvMF_0176 are separated by 2 nucleotides DvMF_0176 and DvMF_0177 are separated by 485 nucleotides
DvMF_0174: DvMF_0174 - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 190,667 to 191,680
_0174
DvMF_0175: DvMF_0175 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 191,843 to 192,373
_0175
DvMF_0176: DvMF_0176 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 192,376 to 192,900
_0176
DvMF_0177: DvMF_0177 - Lytic transglycosylase catalytic (RefSeq), at 193,386 to 194,675
_0177
Position (kb) 192
193 Strain fitness (log2 ratio) -1
0
1 at 191.512 kb on + strand, within DvMF_0174 at 191.670 kb on + strand at 191.730 kb on + strand at 191.761 kb on + strand at 192.031 kb on + strand, within DvMF_0175 at 192.185 kb on - strand, within DvMF_0175 at 192.274 kb on + strand, within DvMF_0175 at 192.439 kb on + strand, within DvMF_0176 at 192.973 kb on + strand at 193.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 191,512 + DvMF_0174 0.83 +0.7 191,670 + +0.1 191,730 + -0.8 191,761 + -0.3 192,031 + DvMF_0175 0.35 -0.1 192,185 - DvMF_0175 0.64 -1.3 192,274 + DvMF_0175 0.81 -0.2 192,439 + DvMF_0176 0.12 -0.0 192,973 + -0.6 193,167 - -0.5
Or see this region's nucleotide sequence