Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0105 and rplQ overlap by 11 nucleotides rplQ and DvMF_0107 are separated by 195 nucleotides DvMF_0107 and DvMF_0108 overlap by 4 nucleotides
DvMF_0105: DvMF_0105 - DNA-directed RNA polymerase subunit alpha (RefSeq), at 113,673 to 114,716
_0105
DvMF_0106: rplQ - 50S ribosomal protein L17 (RefSeq), at 114,706 to 115,107
rplQ
DvMF_0107: DvMF_0107 - selenide, water dikinase (RefSeq), at 115,303 to 116,355
_0107
DvMF_0108: DvMF_0108 - transcriptional regulator, LysR family (RefSeq), at 116,352 to 117,314
_0108
Position (kb)
115
116
117 Strain fitness (log2 ratio)
-1
0
1 at 115.291 kb on + strand at 115.299 kb on - strand at 115.611 kb on - strand, within DvMF_0107 at 115.622 kb on - strand, within DvMF_0107 at 115.752 kb on + strand, within DvMF_0107 at 116.228 kb on + strand, within DvMF_0107 at 116.237 kb on - strand, within DvMF_0107 at 116.290 kb on + strand at 116.321 kb on + strand at 116.428 kb on - strand at 116.462 kb on - strand, within DvMF_0108 at 116.624 kb on - strand, within DvMF_0108 at 116.929 kb on - strand, within DvMF_0108 at 116.964 kb on + strand, within DvMF_0108 at 117.101 kb on + strand, within DvMF_0108 at 117.101 kb on + strand, within DvMF_0108 at 117.144 kb on - strand, within DvMF_0108 at 117.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 115,291 + -0.6 115,299 - -0.6 115,611 - DvMF_0107 0.29 -0.1 115,622 - DvMF_0107 0.30 -0.0 115,752 + DvMF_0107 0.43 +0.3 116,228 + DvMF_0107 0.88 -0.5 116,237 - DvMF_0107 0.89 -0.5 116,290 + -0.0 116,321 + -1.3 116,428 - -0.0 116,462 - DvMF_0108 0.11 -0.0 116,624 - DvMF_0108 0.28 -0.0 116,929 - DvMF_0108 0.60 -0.4 116,964 + DvMF_0108 0.64 -0.3 117,101 + DvMF_0108 0.78 -0.4 117,101 + DvMF_0108 0.78 -0.3 117,144 - DvMF_0108 0.82 -0.1 117,242 - -0.2
Or see this region's nucleotide sequence