Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0042

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0040 and DvMF_0041 are separated by 143 nucleotidesDvMF_0041 and DvMF_0042 are separated by 86 nucleotides DvMF_0040: DvMF_0040 - Mammalian cell entry related domain protein (RefSeq), at 52,319 to 53,302 _0040 DvMF_0041: DvMF_0041 - protein of unknown function DUF330 (RefSeq), at 53,446 to 54,039 _0041 DvMF_0042: DvMF_0042 - diguanylate cyclase (RefSeq), at 54,126 to 55,274 _0042 Position (kb) 54 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1at 53.238 kb on + strandat 53.289 kb on - strandat 53.340 kb on - strandat 53.396 kb on - strandat 53.764 kb on + strand, within DvMF_0041at 53.772 kb on - strand, within DvMF_0041at 53.886 kb on - strand, within DvMF_0041at 54.033 kb on + strandat 54.125 kb on - strandat 54.236 kb on + strandat 54.268 kb on + strand, within DvMF_0042at 54.343 kb on - strand, within DvMF_0042at 54.524 kb on - strand, within DvMF_0042at 54.561 kb on - strand, within DvMF_0042at 54.605 kb on + strand, within DvMF_0042at 54.613 kb on - strand, within DvMF_0042at 54.735 kb on - strand, within DvMF_0042at 55.121 kb on + strand, within DvMF_0042at 55.226 kb on - strandat 55.226 kb on - strandat 55.574 kb on - strandat 55.625 kb on + strandat 55.829 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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53,238 + -0.6
53,289 - -1.7
53,340 - -0.3
53,396 - -0.5
53,764 + DvMF_0041 0.54 -0.8
53,772 - DvMF_0041 0.55 -0.4
53,886 - DvMF_0041 0.74 -1.0
54,033 + -0.1
54,125 - -0.6
54,236 + -0.1
54,268 + DvMF_0042 0.12 -0.0
54,343 - DvMF_0042 0.19 +0.1
54,524 - DvMF_0042 0.35 -0.4
54,561 - DvMF_0042 0.38 +0.2
54,605 + DvMF_0042 0.42 +0.5
54,613 - DvMF_0042 0.42 -0.4
54,735 - DvMF_0042 0.53 -0.3
55,121 + DvMF_0042 0.87 +0.0
55,226 - -0.6
55,226 - -3.2
55,574 - -0.3
55,625 + -0.7
55,829 + -0.9

Or see this region's nucleotide sequence