Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0028

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0027 and DvMF_0028 are separated by 137 nucleotidesDvMF_0028 and DvMF_0029 are separated by 202 nucleotides DvMF_0027: DvMF_0027 - indolepyruvate/phenylpyruvate decarboxylase (RefSeq), at 34,593 to 36,311 _0027 DvMF_0028: DvMF_0028 - hypothetical protein (RefSeq), at 36,449 to 37,012 _0028 DvMF_0029: DvMF_0029 - hypothetical protein (RefSeq), at 37,215 to 37,841 _0029 Position (kb) 36 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 35.740 kb on + strand, within DvMF_0027at 35.740 kb on + strand, within DvMF_0027at 35.896 kb on + strand, within DvMF_0027at 35.986 kb on + strand, within DvMF_0027at 35.986 kb on + strand, within DvMF_0027at 36.046 kb on - strand, within DvMF_0027at 36.046 kb on - strand, within DvMF_0027at 36.346 kb on + strandat 36.902 kb on - strand, within DvMF_0028at 37.041 kb on - strandat 37.177 kb on + strandat 37.487 kb on + strand, within DvMF_0029at 37.843 kb on + strandat 37.977 kb on - strandat 37.997 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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35,740 + DvMF_0027 0.67 -0.7
35,740 + DvMF_0027 0.67 -0.8
35,896 + DvMF_0027 0.76 -0.6
35,986 + DvMF_0027 0.81 -1.0
35,986 + DvMF_0027 0.81 -0.7
36,046 - DvMF_0027 0.85 +0.3
36,046 - DvMF_0027 0.85 -2.8
36,346 + -0.4
36,902 - DvMF_0028 0.80 +2.0
37,041 - -0.9
37,177 + +0.2
37,487 + DvMF_0029 0.43 -0.8
37,843 + +2.3
37,977 - +0.0
37,997 + +2.3

Or see this region's nucleotide sequence