Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0025

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0024 and DvMF_0025 are separated by 44 nucleotidesDvMF_0025 and DvMF_0026 are separated by 235 nucleotides DvMF_0024: DvMF_0024 - histone deacetylase superfamily (RefSeq), at 29,953 to 31,272 _0024 DvMF_0025: DvMF_0025 - protein of unknown function DUF1121 (RefSeq), at 31,317 to 32,003 _0025 DvMF_0026: DvMF_0026 - succinyl-CoA synthetase, alpha subunit (RefSeq), at 32,239 to 34,368 _0026 Position (kb) 31 32 33Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 30.401 kb on + strand, within DvMF_0024at 30.587 kb on - strand, within DvMF_0024at 30.616 kb on - strand, within DvMF_0024at 30.725 kb on - strand, within DvMF_0024at 30.900 kb on - strand, within DvMF_0024at 31.335 kb on - strandat 31.678 kb on + strand, within DvMF_0025at 31.793 kb on - strand, within DvMF_0025at 31.803 kb on - strand, within DvMF_0025at 31.865 kb on - strand, within DvMF_0025at 32.154 kb on - strandat 32.164 kb on - strandat 32.165 kb on - strandat 32.175 kb on - strandat 32.315 kb on + strandat 32.412 kb on + strandat 32.412 kb on + strandat 32.583 kb on - strand, within DvMF_0026at 32.837 kb on - strand, within DvMF_0026at 32.844 kb on - strand, within DvMF_0026at 32.999 kb on + strand, within DvMF_0026

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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30,401 + DvMF_0024 0.34 -3.2
30,587 - DvMF_0024 0.48 -2.0
30,616 - DvMF_0024 0.50 -4.7
30,725 - DvMF_0024 0.58 -0.8
30,900 - DvMF_0024 0.72 -2.5
31,335 - -1.7
31,678 + DvMF_0025 0.53 -0.8
31,793 - DvMF_0025 0.69 +0.2
31,803 - DvMF_0025 0.71 -0.8
31,865 - DvMF_0025 0.80 +3.7
32,154 - -0.4
32,164 - -0.1
32,165 - +0.3
32,175 - +0.7
32,315 + -0.6
32,412 + -0.4
32,412 + -0.4
32,583 - DvMF_0026 0.16 -0.5
32,837 - DvMF_0026 0.28 +1.3
32,844 - DvMF_0026 0.28 -0.4
32,999 + DvMF_0026 0.36 +0.6

Or see this region's nucleotide sequence