Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0006

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0005 and DvMF_0006 are separated by 402 nucleotidesDvMF_0006 and DvMF_R0001 are separated by 405 nucleotidesDvMF_R0001 and DvMF_0007 are separated by 316 nucleotides DvMF_0005: DvMF_0005 - methyltransferase small (RefSeq), at 6,402 to 7,196 _0005 DvMF_0006: DvMF_0006 - hypothetical protein (RefSeq), at 7,599 to 8,240 _0006 DvMF_R0001: DvMF_R0001 - tRNA-Gly (RefSeq), at 8,646 to 8,720 _R0001 DvMF_0007: DvMF_0007 - protein of unknown function DUF302 (RefSeq), at 9,037 to 9,444 _0007 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1at 6.739 kb on - strand, within DvMF_0005at 6.739 kb on - strand, within DvMF_0005at 6.763 kb on + strand, within DvMF_0005at 6.831 kb on - strand, within DvMF_0005at 6.937 kb on + strand, within DvMF_0005at 6.994 kb on + strand, within DvMF_0005at 7.210 kb on - strandat 7.295 kb on + strandat 7.295 kb on + strandat 7.412 kb on - strandat 7.689 kb on + strand, within DvMF_0006at 7.803 kb on + strand, within DvMF_0006at 7.953 kb on - strand, within DvMF_0006at 7.972 kb on - strand, within DvMF_0006at 8.083 kb on - strand, within DvMF_0006at 8.096 kb on + strand, within DvMF_0006at 8.254 kb on - strandat 8.339 kb on - strandat 8.505 kb on + strandat 8.633 kb on - strandat 8.683 kb on - strand, within DvMF_R0001at 8.966 kb on - strandat 8.993 kb on - strandat 9.136 kb on - strand, within DvMF_0007at 9.189 kb on + strand, within DvMF_0007

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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6,739 - DvMF_0005 0.42 -0.9
6,739 - DvMF_0005 0.42 -1.4
6,763 + DvMF_0005 0.45 -0.2
6,831 - DvMF_0005 0.54 -0.7
6,937 + DvMF_0005 0.67 -2.4
6,994 + DvMF_0005 0.74 -1.1
7,210 - -0.8
7,295 + -0.9
7,295 + -0.8
7,412 - -0.3
7,689 + DvMF_0006 0.14 +0.5
7,803 + DvMF_0006 0.32 +0.6
7,953 - DvMF_0006 0.55 -0.1
7,972 - DvMF_0006 0.58 +0.4
8,083 - DvMF_0006 0.75 +0.3
8,096 + DvMF_0006 0.77 -0.1
8,254 - +0.3
8,339 - -0.8
8,505 + -0.1
8,633 - -0.2
8,683 - DvMF_R0001 0.49 -0.4
8,966 - -0.6
8,993 - -0.4
9,136 - DvMF_0007 0.24 -0.5
9,189 + DvMF_0007 0.37 -0.5

Or see this region's nucleotide sequence