Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1890

Experiment: MoYLS4 with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgmhA and DORF38058 are separated by 20 nucleotidesDORF38058 and hemC are separated by 36 nucleotideshemC and DVU1891 are separated by 342 nucleotides DVU1889: gmhA - phosphoheptose isomerase (TIGR), at 1,961,468 to 1,962,094 gmhA DORF38058: DORF38058 - SEED: FIG00604017: hypothetical protein, at 1,962,115 to 1,962,372 DORF38058 DVU1890: hemC - porphobilinogen deaminase (TIGR), at 1,962,409 to 1,963,356 hemC DVU1891: DVU1891 - conserved hypothetical protein (TIGR), at 1,963,699 to 1,964,460 DVU1891 Position (kb) 1962 1963 1964Strain fitness (log2 ratio) -1 0 1at 1961.422 kb on + strandat 1961.430 kb on - strandat 1962.332 kb on + strand, within DORF38058at 1963.426 kb on - strandat 1963.490 kb on + strandat 1963.543 kb on + strandat 1963.576 kb on + strandat 1963.605 kb on + strandat 1963.666 kb on - strandat 1963.666 kb on - strandat 1963.678 kb on - strandat 1963.691 kb on + strandat 1963.696 kb on + strandat 1963.848 kb on + strand, within DVU1891at 1963.889 kb on + strand, within DVU1891at 1963.889 kb on + strand, within DVU1891at 1963.897 kb on - strand, within DVU1891at 1963.976 kb on - strand, within DVU1891at 1963.989 kb on + strand, within DVU1891at 1964.149 kb on + strand, within DVU1891at 1964.183 kb on + strand, within DVU1891at 1964.279 kb on - strand, within DVU1891at 1964.285 kb on - strand, within DVU1891

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Selenate 750uM
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1,961,422 + -0.1
1,961,430 - -0.3
1,962,332 + DORF38058 0.84 -1.2
1,963,426 - -0.3
1,963,490 + +0.0
1,963,543 + +1.3
1,963,576 + -0.1
1,963,605 + -0.3
1,963,666 - -0.9
1,963,666 - -0.2
1,963,678 - -0.4
1,963,691 + -0.1
1,963,696 + +0.4
1,963,848 + DVU1891 0.20 -0.1
1,963,889 + DVU1891 0.25 -1.0
1,963,889 + DVU1891 0.25 -0.9
1,963,897 - DVU1891 0.26 -1.1
1,963,976 - DVU1891 0.36 -0.4
1,963,989 + DVU1891 0.38 +0.4
1,964,149 + DVU1891 0.59 -1.7
1,964,183 + DVU1891 0.64 -0.4
1,964,279 - DVU1891 0.76 -0.3
1,964,285 - DVU1891 0.77 +0.4

Or see this region's nucleotide sequence