Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1641

Experiment: MoYLS4 with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1639 and DORF12455 are separated by 95 nucleotidesDORF12455 and DORF12457 overlap by 23 nucleotidesDORF12457 and DVU1641 are separated by 44 nucleotidesDVU1641 and DORF12461 are separated by 20 nucleotidesDORF12461 and DORF12465 are separated by 39 nucleotidesDORF12465 and DORF12467 overlap by 14 nucleotidesDORF12467 and DORF12469 are separated by 3 nucleotidesDORF12469 and DVU1643 are separated by 53 nucleotides DVU1639: DVU1639 - conserved domain protein (TIGR), at 1,719,951 to 1,720,946 DVU1639 DORF12455: DORF12455 - SEED: helix-turn-helix protein, CopG family, at 1,721,042 to 1,721,284 DORF12455 DORF12457: DORF12457 - SEED: protein of unknown function DUF497, at 1,721,262 to 1,721,534 DORF12457 DVU1641: DVU1641 - conserved hypothetical protein (TIGR), at 1,721,579 to 1,721,902 DVU1641 DORF12461: DORF12461 - SEED: HigA protein (antitoxin to HigB), at 1,721,923 to 1,722,225 DORF12461 DORF12465: DORF12465 - SEED: HigB toxin protein, at 1,722,265 to 1,722,582 DORF12465 DORF12467: DORF12467 - SEED: protein of unknown function DUF497, at 1,722,569 to 1,722,736 DORF12467 DORF12469: DORF12469 - no description, at 1,722,740 to 1,722,838 DORF12469 DVU1643: DVU1643 - conserved hypothetical protein, degenerate (TIGR), at 1,722,892 to 1,723,426 DVU1643 Position (kb) 1721 1722Strain fitness (log2 ratio) -2 -1 0 1at 1720.596 kb on + strand, within DVU1639at 1720.599 kb on - strand, within DVU1639at 1720.604 kb on - strand, within DVU1639at 1720.757 kb on - strand, within DVU1639at 1720.757 kb on - strand, within DVU1639at 1720.818 kb on + strand, within DVU1639at 1720.823 kb on + strand, within DVU1639at 1720.852 kb on - strandat 1720.906 kb on + strandat 1720.913 kb on + strandat 1720.943 kb on + strandat 1721.040 kb on + strandat 1721.114 kb on + strand, within DORF12455at 1721.228 kb on + strand, within DORF12455at 1721.597 kb on - strandat 1721.752 kb on + strand, within DVU1641at 1721.855 kb on + strand, within DVU1641at 1721.906 kb on - strandat 1721.914 kb on + strandat 1721.923 kb on - strandat 1721.923 kb on - strandat 1721.981 kb on + strand, within DORF12461at 1721.981 kb on + strand, within DORF12461at 1722.186 kb on - strand, within DORF12461at 1722.205 kb on - strandat 1722.249 kb on - strandat 1722.250 kb on + strandat 1722.327 kb on - strand, within DORF12465at 1722.438 kb on + strand, within DORF12465at 1722.441 kb on - strand, within DORF12465at 1722.483 kb on - strand, within DORF12465at 1722.676 kb on - strand, within DORF12467at 1722.698 kb on + strand, within DORF12467at 1722.898 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Selenate 750uM
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1,720,596 + DVU1639 0.65 -1.7
1,720,599 - DVU1639 0.65 +1.3
1,720,604 - DVU1639 0.66 -0.9
1,720,757 - DVU1639 0.81 -1.3
1,720,757 - DVU1639 0.81 -0.3
1,720,818 + DVU1639 0.87 -0.1
1,720,823 + DVU1639 0.88 -0.2
1,720,852 - -0.1
1,720,906 + +0.3
1,720,913 + +1.0
1,720,943 + -0.3
1,721,040 + -0.5
1,721,114 + DORF12455 0.30 -2.1
1,721,228 + DORF12455 0.77 +0.4
1,721,597 - -0.2
1,721,752 + DVU1641 0.53 -0.6
1,721,855 + DVU1641 0.85 -1.5
1,721,906 - -2.5
1,721,914 + +1.2
1,721,923 - -0.7
1,721,923 - -0.5
1,721,981 + DORF12461 0.19 +0.6
1,721,981 + DORF12461 0.19 -0.4
1,722,186 - DORF12461 0.87 +1.0
1,722,205 - -1.7
1,722,249 - -0.1
1,722,250 + -0.1
1,722,327 - DORF12465 0.19 +0.1
1,722,438 + DORF12465 0.54 +0.0
1,722,441 - DORF12465 0.55 +0.1
1,722,483 - DORF12465 0.69 -0.5
1,722,676 - DORF12467 0.64 -0.4
1,722,698 + DORF12467 0.77 -0.2
1,722,898 + -2.1

Or see this region's nucleotide sequence