Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ychF and Synpcc7942_0555 are separated by 104 nucleotides Synpcc7942_0555 and srrB overlap by 4 nucleotides srrB and Synpcc7942_0557 are separated by 194 nucleotides Synpcc7942_0557 and Synpcc7942_0558 are separated by 77 nucleotides
Synpcc7942_0554: ychF - translation-associated GTPase, at 536,594 to 537,685
ychF
Synpcc7942_0555: Synpcc7942_0555 - zinc metalloprotease, at 537,790 to 538,509
_0555
Synpcc7942_0556: srrB - two component transcriptional regulator, winged helix family, at 538,506 to 539,219
srrB
Synpcc7942_0557: Synpcc7942_0557 - hypothetical protein, at 539,414 to 539,605
_0557
Synpcc7942_0558: Synpcc7942_0558 - hypothetical protein, at 539,683 to 540,297
_0558
Position (kb) 538
539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 537.510 kb on + strand, within ychF at 537.517 kb on - strand, within ychF at 537.537 kb on + strand, within ychF at 537.544 kb on - strand, within ychF at 537.574 kb on + strand, within ychF at 537.574 kb on + strand, within ychF at 537.579 kb on + strand at 537.586 kb on + strand at 537.594 kb on - strand at 537.634 kb on + strand at 537.642 kb on - strand at 537.701 kb on - strand at 537.711 kb on + strand at 537.726 kb on + strand at 537.741 kb on + strand at 537.741 kb on + strand at 537.751 kb on + strand at 537.831 kb on - strand at 537.847 kb on + strand at 537.847 kb on + strand at 537.868 kb on - strand, within Synpcc7942_0555 at 537.870 kb on + strand, within Synpcc7942_0555 at 537.870 kb on + strand, within Synpcc7942_0555 at 537.878 kb on - strand at 537.924 kb on + strand, within Synpcc7942_0555 at 537.932 kb on - strand, within Synpcc7942_0555 at 537.932 kb on - strand, within Synpcc7942_0555 at 537.948 kb on - strand, within Synpcc7942_0555 at 538.080 kb on + strand, within Synpcc7942_0555 at 538.081 kb on + strand, within Synpcc7942_0555 at 538.082 kb on - strand, within Synpcc7942_0555 at 538.088 kb on + strand, within Synpcc7942_0555 at 538.088 kb on - strand, within Synpcc7942_0555 at 538.099 kb on + strand, within Synpcc7942_0555 at 538.102 kb on + strand, within Synpcc7942_0555 at 538.105 kb on + strand, within Synpcc7942_0555 at 538.113 kb on - strand, within Synpcc7942_0555 at 538.120 kb on + strand, within Synpcc7942_0555 at 538.163 kb on + strand, within Synpcc7942_0555 at 538.186 kb on - strand, within Synpcc7942_0555 at 538.186 kb on - strand, within Synpcc7942_0555 at 538.188 kb on + strand, within Synpcc7942_0555 at 538.196 kb on - strand, within Synpcc7942_0555 at 538.198 kb on - strand, within Synpcc7942_0555 at 538.256 kb on - strand, within Synpcc7942_0555 at 538.256 kb on - strand, within Synpcc7942_0555 at 538.257 kb on - strand, within Synpcc7942_0555 at 538.337 kb on + strand, within Synpcc7942_0555 at 538.337 kb on + strand, within Synpcc7942_0555 at 538.345 kb on - strand, within Synpcc7942_0555 at 538.345 kb on - strand, within Synpcc7942_0555 at 538.366 kb on + strand, within Synpcc7942_0555 at 538.431 kb on - strand, within Synpcc7942_0555 at 538.504 kb on + strand at 538.504 kb on + strand at 538.576 kb on + strand at 538.597 kb on + strand, within srrB at 538.605 kb on - strand at 538.634 kb on - strand, within srrB at 538.667 kb on + strand, within srrB at 538.736 kb on - strand, within srrB at 538.772 kb on - strand, within srrB at 538.776 kb on + strand at 538.821 kb on + strand, within srrB at 538.824 kb on - strand, within srrB at 538.834 kb on - strand at 538.854 kb on + strand, within srrB at 538.886 kb on + strand, within srrB at 538.894 kb on - strand, within srrB at 538.918 kb on + strand, within srrB at 538.955 kb on - strand at 538.992 kb on + strand, within srrB at 539.027 kb on + strand, within srrB at 539.029 kb on + strand, within srrB at 539.051 kb on + strand, within srrB at 539.051 kb on + strand at 539.092 kb on + strand, within srrB at 539.096 kb on + strand, within srrB at 539.096 kb on + strand, within srrB at 539.105 kb on - strand, within srrB at 539.110 kb on - strand, within srrB at 539.133 kb on - strand, within srrB at 539.147 kb on - strand, within srrB at 539.184 kb on + strand at 539.184 kb on + strand at 539.194 kb on - strand at 539.216 kb on + strand at 539.224 kb on - strand at 539.229 kb on - strand at 539.229 kb on - strand at 539.239 kb on + strand at 539.241 kb on - strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.244 kb on + strand at 539.250 kb on + strand at 539.252 kb on - strand at 539.253 kb on + strand at 539.253 kb on + strand at 539.254 kb on - strand at 539.271 kb on - strand at 539.271 kb on - strand at 539.273 kb on + strand at 539.288 kb on - strand at 539.309 kb on + strand at 539.318 kb on + strand at 539.374 kb on - strand at 539.377 kb on + strand at 539.391 kb on - strand at 539.401 kb on + strand at 539.409 kb on + strand at 539.409 kb on - strand at 539.409 kb on - strand at 539.409 kb on - strand at 539.414 kb on + strand at 539.459 kb on + strand, within Synpcc7942_0557 at 539.459 kb on + strand, within Synpcc7942_0557 at 539.467 kb on - strand, within Synpcc7942_0557 at 539.474 kb on - strand, within Synpcc7942_0557 at 539.626 kb on - strand at 539.638 kb on + strand at 539.646 kb on - strand at 539.670 kb on - strand at 539.670 kb on - strand at 539.714 kb on + strand at 539.742 kb on + strand at 539.801 kb on + strand, within Synpcc7942_0558 at 539.811 kb on - strand, within Synpcc7942_0558 at 539.835 kb on - strand, within Synpcc7942_0558 at 539.865 kb on + strand, within Synpcc7942_0558 at 539.960 kb on - strand, within Synpcc7942_0558 at 540.012 kb on + strand, within Synpcc7942_0558 at 540.059 kb on - strand, within Synpcc7942_0558 at 540.131 kb on + strand, within Synpcc7942_0558
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 537,510 + ychF Synpcc7942_0554 0.84 -0.5 537,517 - ychF Synpcc7942_0554 0.85 +1.1 537,537 + ychF Synpcc7942_0554 0.86 -1.4 537,544 - ychF Synpcc7942_0554 0.87 -0.3 537,574 + ychF Synpcc7942_0554 0.90 +1.1 537,574 + ychF Synpcc7942_0554 0.90 +1.0 537,579 + +0.0 537,586 + +0.5 537,594 - +0.4 537,634 + +0.6 537,642 - -1.5 537,701 - -0.7 537,711 + +0.8 537,726 + -0.6 537,741 + +0.5 537,741 + +0.3 537,751 + +0.9 537,831 - -0.4 537,847 + -1.4 537,847 + -0.7 537,868 - Synpcc7942_0555 0.11 -0.0 537,870 + Synpcc7942_0555 0.11 -0.3 537,870 + Synpcc7942_0555 0.11 -0.9 537,878 - +0.0 537,924 + Synpcc7942_0555 0.19 -0.0 537,932 - Synpcc7942_0555 0.20 +0.5 537,932 - Synpcc7942_0555 0.20 -0.7 537,948 - Synpcc7942_0555 0.22 -1.1 538,080 + Synpcc7942_0555 0.40 +0.7 538,081 + Synpcc7942_0555 0.40 -1.2 538,082 - Synpcc7942_0555 0.41 -0.2 538,088 + Synpcc7942_0555 0.41 -1.1 538,088 - Synpcc7942_0555 0.41 -1.3 538,099 + Synpcc7942_0555 0.43 +1.4 538,102 + Synpcc7942_0555 0.43 +1.0 538,105 + Synpcc7942_0555 0.44 -0.7 538,113 - Synpcc7942_0555 0.45 -0.2 538,120 + Synpcc7942_0555 0.46 -0.7 538,163 + Synpcc7942_0555 0.52 +0.6 538,186 - Synpcc7942_0555 0.55 +0.2 538,186 - Synpcc7942_0555 0.55 +1.9 538,188 + Synpcc7942_0555 0.55 +0.1 538,196 - Synpcc7942_0555 0.56 +0.2 538,198 - Synpcc7942_0555 0.57 -0.7 538,256 - Synpcc7942_0555 0.65 -0.3 538,256 - Synpcc7942_0555 0.65 -0.1 538,257 - Synpcc7942_0555 0.65 +0.8 538,337 + Synpcc7942_0555 0.76 +0.4 538,337 + Synpcc7942_0555 0.76 +0.6 538,345 - Synpcc7942_0555 0.77 +1.9 538,345 - Synpcc7942_0555 0.77 +1.2 538,366 + Synpcc7942_0555 0.80 -0.4 538,431 - Synpcc7942_0555 0.89 -0.6 538,504 + -0.4 538,504 + -0.1 538,576 + -2.1 538,597 + srrB Synpcc7942_0556 0.13 -1.6 538,605 - -0.4 538,634 - srrB Synpcc7942_0556 0.18 -1.2 538,667 + srrB Synpcc7942_0556 0.23 -0.6 538,736 - srrB Synpcc7942_0556 0.32 -1.3 538,772 - srrB Synpcc7942_0556 0.37 -2.7 538,776 + +1.0 538,821 + srrB Synpcc7942_0556 0.44 -0.6 538,824 - srrB Synpcc7942_0556 0.45 -1.7 538,834 - -0.4 538,854 + srrB Synpcc7942_0556 0.49 -2.0 538,886 + srrB Synpcc7942_0556 0.53 -0.8 538,894 - srrB Synpcc7942_0556 0.54 -0.5 538,918 + srrB Synpcc7942_0556 0.58 -1.2 538,955 - -0.4 538,992 + srrB Synpcc7942_0556 0.68 +0.0 539,027 + srrB Synpcc7942_0556 0.73 -1.1 539,029 + srrB Synpcc7942_0556 0.73 -1.1 539,051 + srrB Synpcc7942_0556 0.76 +0.2 539,051 + +0.0 539,092 + srrB Synpcc7942_0556 0.82 -1.4 539,096 + srrB Synpcc7942_0556 0.83 +0.2 539,096 + srrB Synpcc7942_0556 0.83 -2.3 539,105 - srrB Synpcc7942_0556 0.84 -1.5 539,110 - srrB Synpcc7942_0556 0.85 +0.9 539,133 - srrB Synpcc7942_0556 0.88 -1.1 539,147 - srrB Synpcc7942_0556 0.90 -2.0 539,184 + -1.0 539,184 + -0.9 539,194 - -1.2 539,216 + -0.4 539,224 - -0.7 539,229 - -2.2 539,229 - -0.2 539,239 + +0.3 539,241 - -0.1 539,244 + -1.1 539,244 + -0.7 539,244 + +1.0 539,250 + -0.4 539,252 - -1.3 539,253 + -0.1 539,253 + -0.2 539,254 - -0.4 539,271 - -0.9 539,271 - +1.6 539,273 + -0.6 539,288 - -2.3 539,309 + +0.3 539,318 + -1.1 539,374 - -1.3 539,377 + +1.3 539,391 - +0.4 539,401 + +1.0 539,409 + -0.2 539,409 - -1.4 539,409 - -0.6 539,409 - +0.2 539,414 + +0.1 539,459 + Synpcc7942_0557 0.23 -1.4 539,459 + Synpcc7942_0557 0.23 +0.0 539,467 - Synpcc7942_0557 0.28 +0.6 539,474 - Synpcc7942_0557 0.31 -0.3 539,626 - +0.8 539,638 + +0.0 539,646 - -0.3 539,670 - -0.7 539,670 - -0.4 539,714 + -0.9 539,742 + -0.4 539,801 + Synpcc7942_0558 0.19 -0.0 539,811 - Synpcc7942_0558 0.21 +0.7 539,835 - Synpcc7942_0558 0.25 +0.5 539,865 + Synpcc7942_0558 0.30 -3.3 539,960 - Synpcc7942_0558 0.45 -2.4 540,012 + Synpcc7942_0558 0.53 +0.5 540,059 - Synpcc7942_0558 0.61 -0.4 540,131 + Synpcc7942_0558 0.73 +0.3
Or see this region's nucleotide sequence