Experiment: L-Malic (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20865 and HSERO_RS20870 are separated by 143 nucleotides HSERO_RS20870 and HSERO_RS20875 are separated by 161 nucleotides
HSERO_RS20865: HSERO_RS20865 - ABC transporter permease, at 4,773,354 to 4,774,613
_RS20865
HSERO_RS20870: HSERO_RS20870 - hypothetical protein, at 4,774,757 to 4,775,872
_RS20870
HSERO_RS20875: HSERO_RS20875 - hypothetical protein, at 4,776,034 to 4,776,795
_RS20875
Position (kb) 4774
4775
4776 Strain fitness (log2 ratio) -1
0
1
2 at 4773.779 kb on - strand, within HSERO_RS20865 at 4773.797 kb on + strand at 4773.838 kb on + strand, within HSERO_RS20865 at 4773.846 kb on - strand, within HSERO_RS20865 at 4773.874 kb on + strand, within HSERO_RS20865 at 4774.097 kb on + strand, within HSERO_RS20865 at 4774.225 kb on - strand, within HSERO_RS20865 at 4774.309 kb on - strand, within HSERO_RS20865 at 4774.786 kb on - strand at 4774.796 kb on - strand at 4774.811 kb on + strand at 4774.876 kb on - strand, within HSERO_RS20870 at 4775.016 kb on + strand, within HSERO_RS20870 at 4775.016 kb on + strand, within HSERO_RS20870 at 4775.071 kb on + strand, within HSERO_RS20870 at 4775.161 kb on + strand, within HSERO_RS20870 at 4775.161 kb on + strand, within HSERO_RS20870 at 4775.210 kb on + strand, within HSERO_RS20870 at 4775.228 kb on + strand, within HSERO_RS20870 at 4775.251 kb on - strand, within HSERO_RS20870 at 4775.294 kb on - strand, within HSERO_RS20870 at 4775.301 kb on + strand, within HSERO_RS20870 at 4775.301 kb on + strand, within HSERO_RS20870 at 4775.433 kb on - strand, within HSERO_RS20870 at 4775.539 kb on + strand, within HSERO_RS20870 at 4775.631 kb on - strand, within HSERO_RS20870 at 4775.658 kb on - strand, within HSERO_RS20870 at 4775.806 kb on + strand at 4775.814 kb on - strand at 4775.816 kb on - strand at 4775.851 kb on - strand at 4775.853 kb on + strand at 4776.077 kb on - strand at 4776.219 kb on - strand, within HSERO_RS20875 at 4776.302 kb on - strand, within HSERO_RS20875 at 4776.332 kb on + strand, within HSERO_RS20875 at 4776.413 kb on - strand, within HSERO_RS20875 at 4776.416 kb on + strand, within HSERO_RS20875 at 4776.424 kb on - strand, within HSERO_RS20875 at 4776.457 kb on + strand, within HSERO_RS20875 at 4776.525 kb on + strand, within HSERO_RS20875 at 4776.589 kb on - strand, within HSERO_RS20875 at 4776.595 kb on - strand, within HSERO_RS20875 at 4776.717 kb on - strand, within HSERO_RS20875 at 4776.841 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 8 days remove 4,773,779 - HSERO_RS20865 0.34 +1.0 4,773,797 + +0.2 4,773,838 + HSERO_RS20865 0.38 +1.3 4,773,846 - HSERO_RS20865 0.39 +1.1 4,773,874 + HSERO_RS20865 0.41 +1.7 4,774,097 + HSERO_RS20865 0.59 +1.3 4,774,225 - HSERO_RS20865 0.69 +2.7 4,774,309 - HSERO_RS20865 0.76 +1.7 4,774,786 - -0.3 4,774,796 - -0.1 4,774,811 + -0.9 4,774,876 - HSERO_RS20870 0.11 -0.3 4,775,016 + HSERO_RS20870 0.23 +0.2 4,775,016 + HSERO_RS20870 0.23 -0.1 4,775,071 + HSERO_RS20870 0.28 -0.2 4,775,161 + HSERO_RS20870 0.36 +0.6 4,775,161 + HSERO_RS20870 0.36 -0.0 4,775,210 + HSERO_RS20870 0.41 +0.1 4,775,228 + HSERO_RS20870 0.42 -0.5 4,775,251 - HSERO_RS20870 0.44 -0.5 4,775,294 - HSERO_RS20870 0.48 +0.2 4,775,301 + HSERO_RS20870 0.49 +0.5 4,775,301 + HSERO_RS20870 0.49 +0.2 4,775,433 - HSERO_RS20870 0.61 -0.3 4,775,539 + HSERO_RS20870 0.70 +0.3 4,775,631 - HSERO_RS20870 0.78 +0.2 4,775,658 - HSERO_RS20870 0.81 -0.2 4,775,806 + -0.1 4,775,814 - -0.1 4,775,816 - +0.0 4,775,851 - -1.5 4,775,853 + +0.2 4,776,077 - +0.3 4,776,219 - HSERO_RS20875 0.24 +0.6 4,776,302 - HSERO_RS20875 0.35 +0.1 4,776,332 + HSERO_RS20875 0.39 +0.7 4,776,413 - HSERO_RS20875 0.50 -0.1 4,776,416 + HSERO_RS20875 0.50 +0.2 4,776,424 - HSERO_RS20875 0.51 +0.4 4,776,457 + HSERO_RS20875 0.56 -0.0 4,776,525 + HSERO_RS20875 0.64 -0.4 4,776,589 - HSERO_RS20875 0.73 -0.0 4,776,595 - HSERO_RS20875 0.74 +0.7 4,776,717 - HSERO_RS20875 0.90 -1.4 4,776,841 - +0.5
Or see this region's nucleotide sequence