Experiment: L-Malic (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01515 and HSERO_RS01520 are separated by 1 nucleotides HSERO_RS01520 and HSERO_RS01525 are separated by 22 nucleotides HSERO_RS01525 and HSERO_RS01530 are separated by 94 nucleotides
HSERO_RS01515: HSERO_RS01515 - hemin-binding protein, at 328,788 to 330,488
_RS01515
HSERO_RS01520: HSERO_RS01520 - hemagglutinin, at 330,490 to 334,758
_RS01520
HSERO_RS01525: HSERO_RS01525 - hypothetical protein, at 334,781 to 335,539
_RS01525
HSERO_RS01530: HSERO_RS01530 - 3',5'-cyclic-nucleotide phosphodiesterase, at 335,634 to 336,407
_RS01530
Position (kb) 330
331
332
333
334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 329.506 kb on + strand, within HSERO_RS01515 at 329.549 kb on + strand, within HSERO_RS01515 at 329.566 kb on - strand, within HSERO_RS01515 at 329.601 kb on - strand, within HSERO_RS01515 at 329.767 kb on - strand, within HSERO_RS01515 at 329.819 kb on - strand, within HSERO_RS01515 at 329.942 kb on + strand, within HSERO_RS01515 at 329.989 kb on - strand, within HSERO_RS01515 at 330.157 kb on + strand, within HSERO_RS01515 at 330.331 kb on + strand at 330.365 kb on - strand at 330.469 kb on + strand at 330.475 kb on + strand at 330.575 kb on + strand at 330.722 kb on - strand at 330.962 kb on - strand, within HSERO_RS01520 at 330.996 kb on - strand, within HSERO_RS01520 at 331.007 kb on - strand, within HSERO_RS01520 at 331.117 kb on + strand, within HSERO_RS01520 at 331.235 kb on - strand, within HSERO_RS01520 at 331.310 kb on - strand, within HSERO_RS01520 at 331.450 kb on + strand, within HSERO_RS01520 at 331.530 kb on + strand, within HSERO_RS01520 at 331.576 kb on + strand, within HSERO_RS01520 at 331.611 kb on - strand, within HSERO_RS01520 at 331.649 kb on - strand, within HSERO_RS01520 at 331.656 kb on - strand, within HSERO_RS01520 at 331.685 kb on - strand, within HSERO_RS01520 at 331.873 kb on - strand, within HSERO_RS01520 at 332.254 kb on + strand, within HSERO_RS01520 at 332.259 kb on + strand, within HSERO_RS01520 at 332.304 kb on - strand, within HSERO_RS01520 at 332.336 kb on + strand, within HSERO_RS01520 at 332.432 kb on + strand, within HSERO_RS01520 at 332.540 kb on + strand, within HSERO_RS01520 at 332.643 kb on + strand, within HSERO_RS01520 at 332.798 kb on - strand, within HSERO_RS01520 at 332.812 kb on + strand, within HSERO_RS01520 at 332.848 kb on - strand, within HSERO_RS01520 at 332.909 kb on + strand, within HSERO_RS01520 at 333.033 kb on + strand, within HSERO_RS01520 at 333.052 kb on + strand at 333.173 kb on + strand, within HSERO_RS01520 at 333.190 kb on + strand, within HSERO_RS01520 at 333.219 kb on + strand, within HSERO_RS01520 at 333.288 kb on + strand, within HSERO_RS01520 at 333.334 kb on + strand, within HSERO_RS01520 at 333.400 kb on - strand, within HSERO_RS01520 at 333.462 kb on + strand, within HSERO_RS01520 at 333.477 kb on - strand, within HSERO_RS01520 at 333.642 kb on + strand, within HSERO_RS01520 at 333.675 kb on + strand, within HSERO_RS01520 at 333.702 kb on - strand, within HSERO_RS01520 at 333.875 kb on + strand, within HSERO_RS01520 at 333.883 kb on - strand, within HSERO_RS01520 at 333.941 kb on + strand, within HSERO_RS01520 at 333.997 kb on - strand, within HSERO_RS01520 at 334.024 kb on - strand, within HSERO_RS01520 at 334.173 kb on + strand, within HSERO_RS01520 at 334.212 kb on + strand, within HSERO_RS01520 at 334.445 kb on + strand at 334.549 kb on - strand at 334.627 kb on - strand at 334.766 kb on + strand at 334.800 kb on - strand at 335.017 kb on - strand, within HSERO_RS01525 at 335.061 kb on + strand, within HSERO_RS01525 at 335.061 kb on + strand, within HSERO_RS01525 at 335.134 kb on + strand, within HSERO_RS01525 at 335.142 kb on - strand, within HSERO_RS01525 at 335.251 kb on + strand, within HSERO_RS01525 at 335.384 kb on - strand, within HSERO_RS01525 at 335.531 kb on + strand at 335.555 kb on - strand at 335.736 kb on - strand, within HSERO_RS01530
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 8 days remove 329,506 + HSERO_RS01515 0.42 +1.2 329,549 + HSERO_RS01515 0.45 +0.9 329,566 - HSERO_RS01515 0.46 +0.9 329,601 - HSERO_RS01515 0.48 +0.9 329,767 - HSERO_RS01515 0.58 +0.6 329,819 - HSERO_RS01515 0.61 +1.2 329,942 + HSERO_RS01515 0.68 +0.6 329,989 - HSERO_RS01515 0.71 +0.9 330,157 + HSERO_RS01515 0.80 -0.3 330,331 + +0.7 330,365 - +1.0 330,469 + +0.9 330,475 + +1.6 330,575 + +0.9 330,722 - +0.6 330,962 - HSERO_RS01520 0.11 +1.2 330,996 - HSERO_RS01520 0.12 +1.3 331,007 - HSERO_RS01520 0.12 +1.1 331,117 + HSERO_RS01520 0.15 +0.9 331,235 - HSERO_RS01520 0.17 +1.2 331,310 - HSERO_RS01520 0.19 +0.9 331,450 + HSERO_RS01520 0.22 +1.0 331,530 + HSERO_RS01520 0.24 +0.6 331,576 + HSERO_RS01520 0.25 +1.0 331,611 - HSERO_RS01520 0.26 +0.7 331,649 - HSERO_RS01520 0.27 +1.0 331,656 - HSERO_RS01520 0.27 +1.2 331,685 - HSERO_RS01520 0.28 +1.3 331,873 - HSERO_RS01520 0.32 +0.9 332,254 + HSERO_RS01520 0.41 +0.6 332,259 + HSERO_RS01520 0.41 +1.1 332,304 - HSERO_RS01520 0.42 +0.5 332,336 + HSERO_RS01520 0.43 +0.8 332,432 + HSERO_RS01520 0.45 +0.7 332,540 + HSERO_RS01520 0.48 +0.8 332,643 + HSERO_RS01520 0.50 +0.7 332,798 - HSERO_RS01520 0.54 +0.6 332,812 + HSERO_RS01520 0.54 +1.4 332,848 - HSERO_RS01520 0.55 +1.0 332,909 + HSERO_RS01520 0.57 +1.7 333,033 + HSERO_RS01520 0.60 +1.0 333,052 + +0.3 333,173 + HSERO_RS01520 0.63 +1.1 333,190 + HSERO_RS01520 0.63 +1.0 333,219 + HSERO_RS01520 0.64 +1.0 333,288 + HSERO_RS01520 0.66 +1.3 333,334 + HSERO_RS01520 0.67 +0.8 333,400 - HSERO_RS01520 0.68 +1.1 333,462 + HSERO_RS01520 0.70 +0.6 333,477 - HSERO_RS01520 0.70 +1.4 333,642 + HSERO_RS01520 0.74 +1.5 333,675 + HSERO_RS01520 0.75 +1.2 333,702 - HSERO_RS01520 0.75 +1.2 333,875 + HSERO_RS01520 0.79 +1.0 333,883 - HSERO_RS01520 0.79 +1.1 333,941 + HSERO_RS01520 0.81 +1.3 333,997 - HSERO_RS01520 0.82 +1.0 334,024 - HSERO_RS01520 0.83 +0.9 334,173 + HSERO_RS01520 0.86 +1.1 334,212 + HSERO_RS01520 0.87 +1.0 334,445 + +0.8 334,549 - +1.0 334,627 - +1.5 334,766 + -0.6 334,800 - -0.1 335,017 - HSERO_RS01525 0.31 +1.0 335,061 + HSERO_RS01525 0.37 +1.2 335,061 + HSERO_RS01525 0.37 -0.6 335,134 + HSERO_RS01525 0.47 +1.0 335,142 - HSERO_RS01525 0.48 +1.2 335,251 + HSERO_RS01525 0.62 +0.4 335,384 - HSERO_RS01525 0.79 +1.3 335,531 + -0.1 335,555 - +0.7 335,736 - HSERO_RS01530 0.13 -3.7
Or see this region's nucleotide sequence