Experiment: L-Malic (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00770 and HSERO_RS00775 are separated by 120 nucleotides HSERO_RS00775 and HSERO_RS00780 are separated by 55 nucleotides HSERO_RS00780 and HSERO_RS00785 are separated by 63 nucleotides
HSERO_RS00770: HSERO_RS00770 - cytochrome C biogenesis protein ResB, at 161,061 to 163,211
_RS00770
HSERO_RS00775: HSERO_RS00775 - cytochrome C biogenesis protein, at 163,332 to 164,486
_RS00775
HSERO_RS00780: HSERO_RS00780 - sugar transferase, at 164,542 to 165,189
_RS00780
HSERO_RS00785: HSERO_RS00785 - acetyltransferase, at 165,253 to 165,843
_RS00785
Position (kb) 163
164
165 Strain fitness (log2 ratio) -1
0
1 at 163.199 kb on + strand at 163.406 kb on + strand at 164.500 kb on + strand at 164.523 kb on - strand at 164.571 kb on + strand at 164.620 kb on + strand, within HSERO_RS00780 at 164.625 kb on + strand, within HSERO_RS00780 at 164.628 kb on - strand, within HSERO_RS00780 at 164.628 kb on - strand, within HSERO_RS00780 at 164.688 kb on + strand, within HSERO_RS00780 at 164.753 kb on - strand, within HSERO_RS00780 at 164.822 kb on - strand, within HSERO_RS00780 at 164.858 kb on + strand, within HSERO_RS00780 at 164.943 kb on + strand, within HSERO_RS00780 at 164.954 kb on + strand, within HSERO_RS00780 at 165.090 kb on + strand, within HSERO_RS00780 at 165.156 kb on - strand at 165.196 kb on + strand at 165.310 kb on - strand at 165.327 kb on + strand, within HSERO_RS00785 at 165.452 kb on + strand, within HSERO_RS00785 at 165.472 kb on + strand, within HSERO_RS00785 at 165.472 kb on + strand, within HSERO_RS00785
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 8 days remove 163,199 + -0.0 163,406 + -1.2 164,500 + -0.6 164,523 - +0.8 164,571 + -0.2 164,620 + HSERO_RS00780 0.12 +0.4 164,625 + HSERO_RS00780 0.13 +0.3 164,628 - HSERO_RS00780 0.13 +0.2 164,628 - HSERO_RS00780 0.13 +0.3 164,688 + HSERO_RS00780 0.23 +1.0 164,753 - HSERO_RS00780 0.33 +0.1 164,822 - HSERO_RS00780 0.43 +0.3 164,858 + HSERO_RS00780 0.49 -0.2 164,943 + HSERO_RS00780 0.62 +1.3 164,954 + HSERO_RS00780 0.64 +0.6 165,090 + HSERO_RS00780 0.85 +0.3 165,156 - +0.4 165,196 + +0.3 165,310 - +0.3 165,327 + HSERO_RS00785 0.13 +0.2 165,452 + HSERO_RS00785 0.34 -0.9 165,472 + HSERO_RS00785 0.37 +0.8 165,472 + HSERO_RS00785 0.37 -0.2
Or see this region's nucleotide sequence