Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06208

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06207 and H281DRAFT_06208 are separated by 340 nucleotidesH281DRAFT_06208 and H281DRAFT_06209 are separated by 40 nucleotidesH281DRAFT_06209 and H281DRAFT_06210 overlap by 4 nucleotides H281DRAFT_06207: H281DRAFT_06207 - Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit, at 99,665 to 100,237 _06207 H281DRAFT_06208: H281DRAFT_06208 - Sugar phosphate permease, at 100,578 to 101,780 _06208 H281DRAFT_06209: H281DRAFT_06209 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 101,821 to 102,693 _06209 H281DRAFT_06210: H281DRAFT_06210 - aconitate hydratase, at 102,690 to 105,386 _06210 Position (kb) 100 101 102Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 99.602 kb on + strandat 99.603 kb on - strandat 99.603 kb on - strandat 99.607 kb on + strandat 99.608 kb on - strandat 99.630 kb on - strandat 99.630 kb on - strandat 99.761 kb on + strand, within H281DRAFT_06207at 99.762 kb on - strand, within H281DRAFT_06207at 99.901 kb on + strand, within H281DRAFT_06207at 99.904 kb on + strand, within H281DRAFT_06207at 99.953 kb on - strand, within H281DRAFT_06207at 99.973 kb on + strand, within H281DRAFT_06207at 100.024 kb on + strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.073 kb on + strand, within H281DRAFT_06207at 100.074 kb on - strand, within H281DRAFT_06207at 100.153 kb on - strand, within H281DRAFT_06207at 100.153 kb on - strand, within H281DRAFT_06207at 100.166 kb on + strand, within H281DRAFT_06207at 100.166 kb on + strand, within H281DRAFT_06207at 100.166 kb on + strand, within H281DRAFT_06207at 100.176 kb on - strand, within H281DRAFT_06207at 100.205 kb on + strandat 100.218 kb on + strandat 100.290 kb on - strandat 100.290 kb on - strandat 100.340 kb on + strandat 100.340 kb on + strandat 100.340 kb on + strandat 100.341 kb on - strandat 100.341 kb on - strandat 100.341 kb on - strandat 100.341 kb on - strandat 100.341 kb on - strandat 100.344 kb on + strandat 100.344 kb on + strandat 100.344 kb on + strandat 100.344 kb on + strandat 100.344 kb on + strandat 100.345 kb on - strandat 100.345 kb on - strandat 100.345 kb on - strandat 100.345 kb on - strandat 100.345 kb on - strandat 100.345 kb on - strandat 100.453 kb on + strandat 100.453 kb on + strandat 100.454 kb on - strandat 100.618 kb on + strandat 100.633 kb on + strandat 100.711 kb on + strand, within H281DRAFT_06208at 100.823 kb on - strand, within H281DRAFT_06208at 100.840 kb on + strand, within H281DRAFT_06208at 100.898 kb on + strand, within H281DRAFT_06208at 100.898 kb on + strand, within H281DRAFT_06208at 100.898 kb on + strand, within H281DRAFT_06208at 100.899 kb on - strand, within H281DRAFT_06208at 100.900 kb on + strand, within H281DRAFT_06208at 100.908 kb on - strand, within H281DRAFT_06208at 100.908 kb on - strand, within H281DRAFT_06208at 100.909 kb on + strand, within H281DRAFT_06208at 100.910 kb on - strand, within H281DRAFT_06208at 100.910 kb on - strand, within H281DRAFT_06208at 100.929 kb on + strand, within H281DRAFT_06208at 100.929 kb on + strand, within H281DRAFT_06208at 100.930 kb on - strand, within H281DRAFT_06208at 100.933 kb on + strand, within H281DRAFT_06208at 101.021 kb on + strand, within H281DRAFT_06208at 101.022 kb on - strand, within H281DRAFT_06208at 101.023 kb on + strand, within H281DRAFT_06208at 101.024 kb on - strand, within H281DRAFT_06208at 101.253 kb on + strand, within H281DRAFT_06208at 101.265 kb on + strand, within H281DRAFT_06208at 101.643 kb on + strand, within H281DRAFT_06208at 101.713 kb on - strandat 101.775 kb on - strandat 101.855 kb on + strandat 101.856 kb on - strandat 101.920 kb on + strand, within H281DRAFT_06209at 101.920 kb on + strand, within H281DRAFT_06209at 101.921 kb on - strand, within H281DRAFT_06209at 101.970 kb on + strand, within H281DRAFT_06209at 101.970 kb on + strand, within H281DRAFT_06209at 101.971 kb on - strand, within H281DRAFT_06209at 101.971 kb on - strand, within H281DRAFT_06209at 102.041 kb on - strand, within H281DRAFT_06209at 102.298 kb on + strand, within H281DRAFT_06209at 102.453 kb on + strand, within H281DRAFT_06209at 102.454 kb on - strand, within H281DRAFT_06209at 102.454 kb on - strand, within H281DRAFT_06209at 102.484 kb on - strand, within H281DRAFT_06209at 102.540 kb on - strand, within H281DRAFT_06209at 102.540 kb on - strand, within H281DRAFT_06209at 102.543 kb on + strand, within H281DRAFT_06209at 102.750 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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99,602 + +0.2
99,603 - +0.5
99,603 - -0.2
99,607 + +1.6
99,608 - -0.3
99,630 - +0.8
99,630 - -0.3
99,761 + H281DRAFT_06207 0.17 +0.5
99,762 - H281DRAFT_06207 0.17 +0.8
99,901 + H281DRAFT_06207 0.41 +0.6
99,904 + H281DRAFT_06207 0.42 +0.2
99,953 - H281DRAFT_06207 0.50 -2.5
99,973 + H281DRAFT_06207 0.54 +1.3
100,024 + H281DRAFT_06207 0.63 -1.1
100,025 - H281DRAFT_06207 0.63 +1.3
100,025 - H281DRAFT_06207 0.63 -0.8
100,025 - H281DRAFT_06207 0.63 +0.1
100,025 - H281DRAFT_06207 0.63 -2.2
100,025 - H281DRAFT_06207 0.63 +0.3
100,073 + H281DRAFT_06207 0.71 +0.3
100,074 - H281DRAFT_06207 0.71 -1.5
100,153 - H281DRAFT_06207 0.85 +0.4
100,153 - H281DRAFT_06207 0.85 +0.1
100,166 + H281DRAFT_06207 0.87 -0.1
100,166 + H281DRAFT_06207 0.87 -0.6
100,166 + H281DRAFT_06207 0.87 +2.1
100,176 - H281DRAFT_06207 0.89 +0.3
100,205 + -0.2
100,218 + -1.8
100,290 - +0.4
100,290 - +0.2
100,340 + -0.6
100,340 + -0.2
100,340 + +0.8
100,341 - +0.7
100,341 - +0.3
100,341 - +1.3
100,341 - +0.5
100,341 - +1.6
100,344 + +0.5
100,344 + +1.3
100,344 + -0.5
100,344 + -1.0
100,344 + +0.4
100,345 - +0.0
100,345 - +0.2
100,345 - +0.5
100,345 - -0.8
100,345 - -0.4
100,345 - -3.0
100,453 + +1.1
100,453 + -0.6
100,454 - +0.6
100,618 + +0.1
100,633 + -0.6
100,711 + H281DRAFT_06208 0.11 -0.7
100,823 - H281DRAFT_06208 0.20 -0.5
100,840 + H281DRAFT_06208 0.22 +0.3
100,898 + H281DRAFT_06208 0.27 -0.8
100,898 + H281DRAFT_06208 0.27 -0.2
100,898 + H281DRAFT_06208 0.27 +0.9
100,899 - H281DRAFT_06208 0.27 -0.5
100,900 + H281DRAFT_06208 0.27 -0.1
100,908 - H281DRAFT_06208 0.27 +0.1
100,908 - H281DRAFT_06208 0.27 -0.1
100,909 + H281DRAFT_06208 0.28 +0.2
100,910 - H281DRAFT_06208 0.28 +1.3
100,910 - H281DRAFT_06208 0.28 +0.2
100,929 + H281DRAFT_06208 0.29 +0.1
100,929 + H281DRAFT_06208 0.29 +0.7
100,930 - H281DRAFT_06208 0.29 -0.3
100,933 + H281DRAFT_06208 0.30 -0.1
101,021 + H281DRAFT_06208 0.37 +0.1
101,022 - H281DRAFT_06208 0.37 -0.0
101,023 + H281DRAFT_06208 0.37 -0.7
101,024 - H281DRAFT_06208 0.37 -0.0
101,253 + H281DRAFT_06208 0.56 +1.0
101,265 + H281DRAFT_06208 0.57 -0.3
101,643 + H281DRAFT_06208 0.89 -0.4
101,713 - +0.1
101,775 - +0.7
101,855 + -0.3
101,856 - -0.1
101,920 + H281DRAFT_06209 0.11 +0.4
101,920 + H281DRAFT_06209 0.11 +2.1
101,921 - H281DRAFT_06209 0.11 -2.3
101,970 + H281DRAFT_06209 0.17 +0.2
101,970 + H281DRAFT_06209 0.17 +1.1
101,971 - H281DRAFT_06209 0.17 +0.1
101,971 - H281DRAFT_06209 0.17 +0.2
102,041 - H281DRAFT_06209 0.25 +0.5
102,298 + H281DRAFT_06209 0.55 -0.2
102,453 + H281DRAFT_06209 0.72 +0.3
102,454 - H281DRAFT_06209 0.73 -0.4
102,454 - H281DRAFT_06209 0.73 +0.3
102,484 - H281DRAFT_06209 0.76 -0.4
102,540 - H281DRAFT_06209 0.82 +0.9
102,540 - H281DRAFT_06209 0.82 -2.2
102,543 + H281DRAFT_06209 0.83 -0.2
102,750 + -2.0

Or see this region's nucleotide sequence