Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05560 and H281DRAFT_05561 are separated by 240 nucleotides H281DRAFT_05561 and H281DRAFT_05562 are separated by 32 nucleotides H281DRAFT_05562 and H281DRAFT_05563 are separated by 191 nucleotides H281DRAFT_05563 and H281DRAFT_05564 are separated by 51 nucleotides
H281DRAFT_05560: H281DRAFT_05560 - putative acyl-CoA dehydrogenase, at 151,559 to 153,277
_05560
H281DRAFT_05561: H281DRAFT_05561 - transcriptional regulator, TetR family, at 153,518 to 154,189
_05561
H281DRAFT_05562: H281DRAFT_05562 - indolepyruvate ferredoxin oxidoreductase, at 154,222 to 157,713
_05562
H281DRAFT_05563: H281DRAFT_05563 - Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC, at 157,905 to 158,381
_05563
H281DRAFT_05564: H281DRAFT_05564 - Aspartate/methionine/tyrosine aminotransferase, at 158,433 to 159,611
_05564
Position (kb) 154
155
156
157
158 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 153.223 kb on - strand at 153.278 kb on + strand at 153.278 kb on + strand at 153.279 kb on - strand at 153.279 kb on - strand at 153.300 kb on - strand at 153.484 kb on - strand at 153.705 kb on - strand, within H281DRAFT_05561 at 153.880 kb on + strand, within H281DRAFT_05561 at 153.880 kb on + strand, within H281DRAFT_05561 at 153.903 kb on - strand, within H281DRAFT_05561 at 153.997 kb on + strand, within H281DRAFT_05561 at 153.997 kb on + strand, within H281DRAFT_05561 at 153.997 kb on + strand, within H281DRAFT_05561 at 153.998 kb on - strand, within H281DRAFT_05561 at 153.998 kb on - strand, within H281DRAFT_05561 at 153.998 kb on - strand, within H281DRAFT_05561 at 154.223 kb on + strand at 154.223 kb on + strand at 154.225 kb on + strand at 154.225 kb on + strand at 154.225 kb on + strand at 154.225 kb on + strand at 154.226 kb on - strand at 154.226 kb on - strand at 154.418 kb on + strand at 154.418 kb on + strand at 154.419 kb on - strand at 154.419 kb on - strand at 154.512 kb on + strand at 154.513 kb on - strand at 154.513 kb on - strand at 154.595 kb on + strand, within H281DRAFT_05562 at 154.595 kb on + strand, within H281DRAFT_05562 at 154.596 kb on - strand, within H281DRAFT_05562 at 154.596 kb on - strand, within H281DRAFT_05562 at 154.596 kb on - strand, within H281DRAFT_05562 at 154.599 kb on + strand, within H281DRAFT_05562 at 154.599 kb on + strand, within H281DRAFT_05562 at 154.600 kb on - strand, within H281DRAFT_05562 at 154.600 kb on - strand, within H281DRAFT_05562 at 154.662 kb on + strand, within H281DRAFT_05562 at 154.663 kb on - strand, within H281DRAFT_05562 at 154.677 kb on - strand, within H281DRAFT_05562 at 154.688 kb on + strand, within H281DRAFT_05562 at 154.688 kb on + strand, within H281DRAFT_05562 at 154.688 kb on + strand, within H281DRAFT_05562 at 154.729 kb on + strand, within H281DRAFT_05562 at 154.730 kb on - strand, within H281DRAFT_05562 at 154.730 kb on - strand, within H281DRAFT_05562 at 154.787 kb on + strand, within H281DRAFT_05562 at 154.787 kb on + strand, within H281DRAFT_05562 at 154.788 kb on - strand, within H281DRAFT_05562 at 154.843 kb on + strand, within H281DRAFT_05562 at 155.069 kb on - strand, within H281DRAFT_05562 at 155.347 kb on + strand, within H281DRAFT_05562 at 155.357 kb on + strand, within H281DRAFT_05562 at 155.455 kb on + strand, within H281DRAFT_05562 at 155.674 kb on - strand, within H281DRAFT_05562 at 155.758 kb on - strand, within H281DRAFT_05562 at 155.838 kb on - strand, within H281DRAFT_05562 at 155.914 kb on - strand, within H281DRAFT_05562 at 156.084 kb on - strand, within H281DRAFT_05562 at 156.126 kb on + strand, within H281DRAFT_05562 at 156.126 kb on + strand, within H281DRAFT_05562 at 156.126 kb on + strand, within H281DRAFT_05562 at 156.126 kb on + strand, within H281DRAFT_05562 at 156.126 kb on + strand, within H281DRAFT_05562 at 156.126 kb on + strand, within H281DRAFT_05562 at 156.127 kb on - strand, within H281DRAFT_05562 at 156.127 kb on - strand, within H281DRAFT_05562 at 156.127 kb on - strand, within H281DRAFT_05562 at 156.128 kb on + strand, within H281DRAFT_05562 at 156.129 kb on - strand, within H281DRAFT_05562 at 156.143 kb on + strand, within H281DRAFT_05562 at 156.143 kb on + strand, within H281DRAFT_05562 at 156.144 kb on - strand at 156.144 kb on - strand, within H281DRAFT_05562 at 156.353 kb on + strand, within H281DRAFT_05562 at 156.361 kb on - strand, within H281DRAFT_05562 at 156.736 kb on + strand, within H281DRAFT_05562 at 156.737 kb on - strand, within H281DRAFT_05562 at 156.888 kb on + strand, within H281DRAFT_05562 at 156.899 kb on + strand, within H281DRAFT_05562 at 157.141 kb on + strand, within H281DRAFT_05562 at 157.186 kb on + strand, within H281DRAFT_05562 at 157.187 kb on - strand, within H281DRAFT_05562 at 157.187 kb on - strand, within H281DRAFT_05562 at 157.433 kb on - strand at 157.644 kb on - strand at 157.997 kb on + strand, within H281DRAFT_05563 at 157.997 kb on + strand, within H281DRAFT_05563 at 157.998 kb on - strand at 158.405 kb on + strand at 158.406 kb on - strand at 158.562 kb on - strand, within H281DRAFT_05564 at 158.638 kb on + strand, within H281DRAFT_05564 at 158.639 kb on - strand, within H281DRAFT_05564 at 158.639 kb on - strand, within H281DRAFT_05564 at 158.639 kb on - strand, within H281DRAFT_05564 at 158.644 kb on + strand, within H281DRAFT_05564 at 158.645 kb on - strand, within H281DRAFT_05564
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 153,223 - -0.5 153,278 + -0.8 153,278 + -0.2 153,279 - -0.3 153,279 - +0.8 153,300 - +0.3 153,484 - +0.2 153,705 - H281DRAFT_05561 0.28 +0.6 153,880 + H281DRAFT_05561 0.54 +1.7 153,880 + H281DRAFT_05561 0.54 +0.9 153,903 - H281DRAFT_05561 0.57 +2.5 153,997 + H281DRAFT_05561 0.71 +1.5 153,997 + H281DRAFT_05561 0.71 +2.1 153,997 + H281DRAFT_05561 0.71 +0.9 153,998 - H281DRAFT_05561 0.71 +1.7 153,998 - H281DRAFT_05561 0.71 +1.7 153,998 - H281DRAFT_05561 0.71 +2.2 154,223 + -1.1 154,223 + -0.3 154,225 + -1.6 154,225 + -1.6 154,225 + -1.4 154,225 + +0.4 154,226 - +0.4 154,226 - -0.4 154,418 + +2.2 154,418 + -1.6 154,419 - +0.5 154,419 - -2.4 154,512 + -1.9 154,513 - -0.1 154,513 - -1.9 154,595 + H281DRAFT_05562 0.11 -1.5 154,595 + H281DRAFT_05562 0.11 -2.8 154,596 - H281DRAFT_05562 0.11 -2.0 154,596 - H281DRAFT_05562 0.11 -3.1 154,596 - H281DRAFT_05562 0.11 +1.0 154,599 + H281DRAFT_05562 0.11 -0.8 154,599 + H281DRAFT_05562 0.11 -0.8 154,600 - H281DRAFT_05562 0.11 -3.5 154,600 - H281DRAFT_05562 0.11 -0.7 154,662 + H281DRAFT_05562 0.13 -2.7 154,663 - H281DRAFT_05562 0.13 -1.8 154,677 - H281DRAFT_05562 0.13 -4.0 154,688 + H281DRAFT_05562 0.13 -3.0 154,688 + H281DRAFT_05562 0.13 -1.0 154,688 + H281DRAFT_05562 0.13 -2.0 154,729 + H281DRAFT_05562 0.15 -2.1 154,730 - H281DRAFT_05562 0.15 +0.7 154,730 - H281DRAFT_05562 0.15 -2.7 154,787 + H281DRAFT_05562 0.16 -0.2 154,787 + H281DRAFT_05562 0.16 -1.8 154,788 - H281DRAFT_05562 0.16 -1.5 154,843 + H281DRAFT_05562 0.18 -2.0 155,069 - H281DRAFT_05562 0.24 -0.8 155,347 + H281DRAFT_05562 0.32 -0.6 155,357 + H281DRAFT_05562 0.33 -1.1 155,455 + H281DRAFT_05562 0.35 -3.0 155,674 - H281DRAFT_05562 0.42 -0.2 155,758 - H281DRAFT_05562 0.44 -2.5 155,838 - H281DRAFT_05562 0.46 -0.8 155,914 - H281DRAFT_05562 0.48 -4.8 156,084 - H281DRAFT_05562 0.53 -0.9 156,126 + H281DRAFT_05562 0.55 -0.7 156,126 + H281DRAFT_05562 0.55 -0.3 156,126 + H281DRAFT_05562 0.55 +0.5 156,126 + H281DRAFT_05562 0.55 -5.0 156,126 + H281DRAFT_05562 0.55 +0.1 156,126 + H281DRAFT_05562 0.55 -1.3 156,127 - H281DRAFT_05562 0.55 -2.4 156,127 - H281DRAFT_05562 0.55 -2.2 156,127 - H281DRAFT_05562 0.55 -0.8 156,128 + H281DRAFT_05562 0.55 -2.7 156,129 - H281DRAFT_05562 0.55 -3.6 156,143 + H281DRAFT_05562 0.55 -2.5 156,143 + H281DRAFT_05562 0.55 -2.3 156,144 - -1.0 156,144 - H281DRAFT_05562 0.55 -0.6 156,353 + H281DRAFT_05562 0.61 -0.9 156,361 - H281DRAFT_05562 0.61 -1.4 156,736 + H281DRAFT_05562 0.72 +0.7 156,737 - H281DRAFT_05562 0.72 -2.2 156,888 + H281DRAFT_05562 0.76 +0.2 156,899 + H281DRAFT_05562 0.77 -0.9 157,141 + H281DRAFT_05562 0.84 -3.6 157,186 + H281DRAFT_05562 0.85 -0.3 157,187 - H281DRAFT_05562 0.85 -2.2 157,187 - H281DRAFT_05562 0.85 -2.9 157,433 - -1.2 157,644 - -1.5 157,997 + H281DRAFT_05563 0.19 +1.3 157,997 + H281DRAFT_05563 0.19 -3.6 157,998 - +0.2 158,405 + -3.6 158,406 - -1.0 158,562 - H281DRAFT_05564 0.11 -0.6 158,638 + H281DRAFT_05564 0.17 -2.3 158,639 - H281DRAFT_05564 0.17 -2.5 158,639 - H281DRAFT_05564 0.17 -2.4 158,639 - H281DRAFT_05564 0.17 -0.2 158,644 + H281DRAFT_05564 0.18 -3.3 158,645 - H281DRAFT_05564 0.18 -0.6
Or see this region's nucleotide sequence