Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05479 and H281DRAFT_05480 are separated by 69 nucleotides H281DRAFT_05480 and H281DRAFT_05481 are separated by 71 nucleotides H281DRAFT_05481 and H281DRAFT_05482 are separated by 16 nucleotides H281DRAFT_05482 and H281DRAFT_05483 are separated by 64 nucleotides
H281DRAFT_05479: H281DRAFT_05479 - hypothetical protein, at 61,154 to 61,339
_05479
H281DRAFT_05480: H281DRAFT_05480 - Nucleotide-binding universal stress protein, UspA family, at 61,409 to 61,849
_05480
H281DRAFT_05481: H281DRAFT_05481 - hypothetical protein, at 61,921 to 62,082
_05481
H281DRAFT_05482: H281DRAFT_05482 - hypothetical protein, at 62,099 to 62,488
_05482
H281DRAFT_05483: H281DRAFT_05483 - protein of unknown function (DUF1840), at 62,553 to 62,870
_05483
Position (kb) 62
63 Strain fitness (log2 ratio) -1
0
1
2 at 61.275 kb on + strand, within H281DRAFT_05479 at 61.440 kb on - strand at 61.571 kb on - strand, within H281DRAFT_05480 at 61.571 kb on - strand, within H281DRAFT_05480 at 61.571 kb on - strand, within H281DRAFT_05480 at 61.674 kb on - strand, within H281DRAFT_05480 at 61.816 kb on - strand at 61.925 kb on + strand at 62.150 kb on - strand, within H281DRAFT_05482 at 62.239 kb on + strand, within H281DRAFT_05482 at 62.240 kb on - strand, within H281DRAFT_05482 at 62.252 kb on - strand, within H281DRAFT_05482 at 62.554 kb on + strand at 62.555 kb on - strand at 62.669 kb on - strand, within H281DRAFT_05483 at 62.802 kb on + strand, within H281DRAFT_05483 at 62.901 kb on + strand at 63.100 kb on + strand at 63.266 kb on + strand at 63.338 kb on + strand at 63.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 61,275 + H281DRAFT_05479 0.65 +1.3 61,440 - +0.5 61,571 - H281DRAFT_05480 0.37 -1.3 61,571 - H281DRAFT_05480 0.37 +1.2 61,571 - H281DRAFT_05480 0.37 +2.0 61,674 - H281DRAFT_05480 0.60 -1.1 61,816 - +0.2 61,925 + -0.3 62,150 - H281DRAFT_05482 0.13 -0.4 62,239 + H281DRAFT_05482 0.36 -0.7 62,240 - H281DRAFT_05482 0.36 -0.1 62,252 - H281DRAFT_05482 0.39 -0.6 62,554 + +1.2 62,555 - +0.3 62,669 - H281DRAFT_05483 0.36 +0.2 62,802 + H281DRAFT_05483 0.78 +1.1 62,901 + -1.1 63,100 + -0.3 63,266 + +0.2 63,338 + -1.5 63,339 - -0.3
Or see this region's nucleotide sequence