Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05377

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05376 and H281DRAFT_05377 are separated by 151 nucleotidesH281DRAFT_05377 and H281DRAFT_05378 are separated by 44 nucleotides H281DRAFT_05376: H281DRAFT_05376 - hypothetical protein, at 133,598 to 134,572 _05376 H281DRAFT_05377: H281DRAFT_05377 - Inosine-uridine nucleoside N-ribohydrolase, at 134,724 to 135,860 _05377 H281DRAFT_05378: H281DRAFT_05378 - transcriptional regulator, LysR family, at 135,905 to 136,861 _05378 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 133.727 kb on - strand, within H281DRAFT_05376at 133.774 kb on - strand, within H281DRAFT_05376at 134.389 kb on + strand, within H281DRAFT_05376at 134.411 kb on - strand, within H281DRAFT_05376at 134.583 kb on + strandat 134.583 kb on + strandat 134.583 kb on + strandat 134.643 kb on - strandat 134.645 kb on + strandat 134.646 kb on - strandat 134.673 kb on + strandat 134.688 kb on + strandat 134.751 kb on + strandat 134.752 kb on - strandat 134.755 kb on + strandat 134.755 kb on + strandat 134.848 kb on - strand, within H281DRAFT_05377at 135.025 kb on - strandat 135.039 kb on + strand, within H281DRAFT_05377at 135.339 kb on + strand, within H281DRAFT_05377at 135.339 kb on + strand, within H281DRAFT_05377at 135.339 kb on + strand, within H281DRAFT_05377at 135.339 kb on + strand, within H281DRAFT_05377at 135.339 kb on + strand, within H281DRAFT_05377at 135.340 kb on - strand, within H281DRAFT_05377at 135.371 kb on + strand, within H281DRAFT_05377at 135.492 kb on - strand, within H281DRAFT_05377at 135.502 kb on - strand, within H281DRAFT_05377at 135.543 kb on - strand, within H281DRAFT_05377at 135.571 kb on - strand, within H281DRAFT_05377at 135.820 kb on - strandat 135.863 kb on + strandat 135.863 kb on + strandat 135.864 kb on - strandat 135.878 kb on - strandat 136.085 kb on + strand, within H281DRAFT_05378at 136.085 kb on + strand, within H281DRAFT_05378at 136.086 kb on - strand, within H281DRAFT_05378at 136.176 kb on + strand, within H281DRAFT_05378at 136.177 kb on - strand, within H281DRAFT_05378at 136.271 kb on - strand, within H281DRAFT_05378at 136.324 kb on + strand, within H281DRAFT_05378at 136.468 kb on + strand, within H281DRAFT_05378at 136.468 kb on + strand, within H281DRAFT_05378at 136.468 kb on + strand, within H281DRAFT_05378at 136.507 kb on - strand, within H281DRAFT_05378at 136.514 kb on - strand, within H281DRAFT_05378at 136.514 kb on - strand, within H281DRAFT_05378at 136.663 kb on - strand, within H281DRAFT_05378at 136.665 kb on + strand, within H281DRAFT_05378at 136.857 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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133,727 - H281DRAFT_05376 0.13 -1.3
133,774 - H281DRAFT_05376 0.18 -0.5
134,389 + H281DRAFT_05376 0.81 -0.5
134,411 - H281DRAFT_05376 0.83 -0.4
134,583 + -0.5
134,583 + -3.6
134,583 + -1.9
134,643 - +0.9
134,645 + -0.5
134,646 - +0.1
134,673 + -0.4
134,688 + -1.1
134,751 + +0.4
134,752 - +0.7
134,755 + -2.0
134,755 + -3.5
134,848 - H281DRAFT_05377 0.11 -0.1
135,025 - +0.3
135,039 + H281DRAFT_05377 0.28 +0.9
135,339 + H281DRAFT_05377 0.54 +0.1
135,339 + H281DRAFT_05377 0.54 -0.4
135,339 + H281DRAFT_05377 0.54 -0.5
135,339 + H281DRAFT_05377 0.54 +0.1
135,339 + H281DRAFT_05377 0.54 +0.5
135,340 - H281DRAFT_05377 0.54 -1.1
135,371 + H281DRAFT_05377 0.57 +2.3
135,492 - H281DRAFT_05377 0.68 -0.4
135,502 - H281DRAFT_05377 0.68 +1.3
135,543 - H281DRAFT_05377 0.72 -0.5
135,571 - H281DRAFT_05377 0.74 +0.4
135,820 - +0.2
135,863 + -1.4
135,863 + +0.0
135,864 - +0.7
135,878 - -1.5
136,085 + H281DRAFT_05378 0.19 -2.5
136,085 + H281DRAFT_05378 0.19 -0.2
136,086 - H281DRAFT_05378 0.19 -0.1
136,176 + H281DRAFT_05378 0.28 -0.4
136,177 - H281DRAFT_05378 0.28 -0.9
136,271 - H281DRAFT_05378 0.38 +0.0
136,324 + H281DRAFT_05378 0.44 -1.3
136,468 + H281DRAFT_05378 0.59 -0.5
136,468 + H281DRAFT_05378 0.59 +1.0
136,468 + H281DRAFT_05378 0.59 +0.0
136,507 - H281DRAFT_05378 0.63 +0.2
136,514 - H281DRAFT_05378 0.64 +1.4
136,514 - H281DRAFT_05378 0.64 -0.1
136,663 - H281DRAFT_05378 0.79 +0.2
136,665 + H281DRAFT_05378 0.79 +0.3
136,857 - +0.0

Or see this region's nucleotide sequence