Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05373 and H281DRAFT_05374 are separated by 54 nucleotides H281DRAFT_05374 and H281DRAFT_05375 are separated by 27 nucleotides H281DRAFT_05375 and H281DRAFT_05376 are separated by 245 nucleotides
H281DRAFT_05373: H281DRAFT_05373 - type VI secretion system protein ImpL, at 128,484 to 132,353
_05373
H281DRAFT_05374: H281DRAFT_05374 - hypothetical protein, at 132,408 to 132,599
_05374
H281DRAFT_05375: H281DRAFT_05375 - peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK, at 132,627 to 133,352
_05375
H281DRAFT_05376: H281DRAFT_05376 - hypothetical protein, at 133,598 to 134,572
_05376
Position (kb) 132
133
134 Strain fitness (log2 ratio) -2
-1
0
1
2 at 131.807 kb on + strand, within H281DRAFT_05373 at 131.874 kb on + strand, within H281DRAFT_05373 at 131.875 kb on - strand, within H281DRAFT_05373 at 131.965 kb on + strand, within H281DRAFT_05373 at 131.965 kb on + strand, within H281DRAFT_05373 at 131.966 kb on - strand, within H281DRAFT_05373 at 131.966 kb on - strand, within H281DRAFT_05373 at 131.981 kb on - strand at 131.981 kb on - strand at 131.981 kb on - strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.353 kb on + strand at 132.353 kb on + strand at 132.354 kb on - strand at 132.488 kb on + strand, within H281DRAFT_05374 at 132.515 kb on + strand, within H281DRAFT_05374 at 132.516 kb on - strand, within H281DRAFT_05374 at 132.516 kb on - strand, within H281DRAFT_05374 at 132.540 kb on + strand, within H281DRAFT_05374 at 132.540 kb on + strand, within H281DRAFT_05374 at 132.540 kb on + strand, within H281DRAFT_05374 at 132.581 kb on + strand at 132.621 kb on + strand at 132.628 kb on + strand at 132.628 kb on + strand at 132.739 kb on + strand, within H281DRAFT_05375 at 132.741 kb on + strand, within H281DRAFT_05375 at 132.741 kb on + strand, within H281DRAFT_05375 at 132.741 kb on + strand, within H281DRAFT_05375 at 132.838 kb on + strand, within H281DRAFT_05375 at 132.838 kb on + strand, within H281DRAFT_05375 at 132.937 kb on + strand, within H281DRAFT_05375 at 133.217 kb on + strand, within H281DRAFT_05375 at 133.217 kb on + strand, within H281DRAFT_05375 at 133.229 kb on + strand, within H281DRAFT_05375 at 133.229 kb on + strand, within H281DRAFT_05375 at 133.447 kb on + strand at 133.461 kb on + strand at 133.501 kb on + strand at 133.502 kb on - strand at 133.509 kb on - strand at 133.556 kb on + strand at 133.557 kb on - strand at 133.559 kb on + strand at 133.658 kb on - strand at 133.658 kb on - strand at 133.727 kb on - strand, within H281DRAFT_05376 at 133.774 kb on - strand, within H281DRAFT_05376
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 131,807 + H281DRAFT_05373 0.86 +1.2 131,874 + H281DRAFT_05373 0.88 +2.3 131,875 - H281DRAFT_05373 0.88 -1.5 131,965 + H281DRAFT_05373 0.90 +0.1 131,965 + H281DRAFT_05373 0.90 +0.5 131,966 - H281DRAFT_05373 0.90 +0.1 131,966 - H281DRAFT_05373 0.90 +1.0 131,981 - -0.5 131,981 - +0.2 131,981 - +0.2 132,260 + +0.0 132,260 + +0.7 132,260 + -0.4 132,261 - -0.3 132,261 - +0.4 132,261 - +1.4 132,353 + -0.0 132,353 + -0.4 132,354 - -0.5 132,488 + H281DRAFT_05374 0.42 -0.3 132,515 + H281DRAFT_05374 0.56 +0.4 132,516 - H281DRAFT_05374 0.56 +0.5 132,516 - H281DRAFT_05374 0.56 +0.6 132,540 + H281DRAFT_05374 0.69 +0.5 132,540 + H281DRAFT_05374 0.69 -1.0 132,540 + H281DRAFT_05374 0.69 +0.2 132,581 + -0.7 132,621 + +0.6 132,628 + +0.9 132,628 + +0.2 132,739 + H281DRAFT_05375 0.15 +0.7 132,741 + H281DRAFT_05375 0.16 +0.5 132,741 + H281DRAFT_05375 0.16 -0.1 132,741 + H281DRAFT_05375 0.16 +0.3 132,838 + H281DRAFT_05375 0.29 -0.2 132,838 + H281DRAFT_05375 0.29 +0.2 132,937 + H281DRAFT_05375 0.43 +1.3 133,217 + H281DRAFT_05375 0.81 +1.1 133,217 + H281DRAFT_05375 0.81 +0.5 133,229 + H281DRAFT_05375 0.83 +0.6 133,229 + H281DRAFT_05375 0.83 +0.7 133,447 + -1.2 133,461 + -0.0 133,501 + -2.0 133,502 - +1.2 133,509 - +0.4 133,556 + -1.0 133,557 - +0.3 133,559 + +1.4 133,658 - -0.1 133,658 - +0.0 133,727 - H281DRAFT_05376 0.13 -1.3 133,774 - H281DRAFT_05376 0.18 -0.5
Or see this region's nucleotide sequence