Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05365

Experiment: Valeric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05364 and H281DRAFT_05365 are separated by 72 nucleotidesH281DRAFT_05365 and H281DRAFT_05366 are separated by 83 nucleotidesH281DRAFT_05366 and H281DRAFT_05367 are separated by 111 nucleotides H281DRAFT_05364: H281DRAFT_05364 - type VI secretion system protein ImpC, at 116,929 to 118,419 _05364 H281DRAFT_05365: H281DRAFT_05365 - type VI secretion system secreted protein Hcp, at 118,492 to 118,995 _05365 H281DRAFT_05366: H281DRAFT_05366 - type VI secretion system protein ImpF, at 119,079 to 119,558 _05366 H281DRAFT_05367: H281DRAFT_05367 - type VI secretion system protein ImpG, at 119,670 to 121,508 _05367 Position (kb) 118 119Strain fitness (log2 ratio) -2 -1 0 1 2at 117.637 kb on + strand, within H281DRAFT_05364at 117.638 kb on - strand, within H281DRAFT_05364at 117.747 kb on + strand, within H281DRAFT_05364at 117.747 kb on + strand, within H281DRAFT_05364at 117.754 kb on + strand, within H281DRAFT_05364at 117.754 kb on + strand, within H281DRAFT_05364at 117.754 kb on + strand, within H281DRAFT_05364at 117.754 kb on + strand, within H281DRAFT_05364at 117.937 kb on - strand, within H281DRAFT_05364at 118.006 kb on + strand, within H281DRAFT_05364at 118.051 kb on + strand, within H281DRAFT_05364at 118.102 kb on + strand, within H281DRAFT_05364at 118.102 kb on + strand, within H281DRAFT_05364at 118.220 kb on - strand, within H281DRAFT_05364at 118.418 kb on - strandat 118.691 kb on + strand, within H281DRAFT_05365at 118.709 kb on - strand, within H281DRAFT_05365at 118.709 kb on - strand, within H281DRAFT_05365at 118.802 kb on + strand, within H281DRAFT_05365at 118.803 kb on - strand, within H281DRAFT_05365at 118.813 kb on + strand, within H281DRAFT_05365at 118.813 kb on + strand, within H281DRAFT_05365at 118.885 kb on + strand, within H281DRAFT_05365at 118.885 kb on + strand, within H281DRAFT_05365at 118.886 kb on - strand, within H281DRAFT_05365at 118.886 kb on - strand, within H281DRAFT_05365at 118.984 kb on + strandat 118.985 kb on - strandat 118.985 kb on - strandat 119.058 kb on + strandat 119.059 kb on - strandat 119.283 kb on + strand, within H281DRAFT_05366at 119.283 kb on + strand, within H281DRAFT_05366at 119.284 kb on - strand, within H281DRAFT_05366at 119.284 kb on - strand, within H281DRAFT_05366at 119.284 kb on - strand, within H281DRAFT_05366at 119.284 kb on - strand, within H281DRAFT_05366at 119.326 kb on - strand, within H281DRAFT_05366at 119.386 kb on + strand, within H281DRAFT_05366at 119.387 kb on - strand, within H281DRAFT_05366at 119.557 kb on - strandat 119.664 kb on - strandat 119.688 kb on + strandat 119.691 kb on + strandat 119.722 kb on - strandat 119.902 kb on + strand, within H281DRAFT_05367at 119.902 kb on + strand, within H281DRAFT_05367at 119.903 kb on - strand, within H281DRAFT_05367at 119.903 kb on - strand, within H281DRAFT_05367at 119.903 kb on - strand, within H281DRAFT_05367at 119.904 kb on + strand, within H281DRAFT_05367at 119.904 kb on + strand, within H281DRAFT_05367at 119.914 kb on - strand, within H281DRAFT_05367at 119.914 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
remove
117,637 + H281DRAFT_05364 0.47 +0.5
117,638 - H281DRAFT_05364 0.48 -0.9
117,747 + H281DRAFT_05364 0.55 +0.3
117,747 + H281DRAFT_05364 0.55 -0.0
117,754 + H281DRAFT_05364 0.55 -0.4
117,754 + H281DRAFT_05364 0.55 -0.7
117,754 + H281DRAFT_05364 0.55 -2.7
117,754 + H281DRAFT_05364 0.55 -0.0
117,937 - H281DRAFT_05364 0.68 -0.0
118,006 + H281DRAFT_05364 0.72 +0.6
118,051 + H281DRAFT_05364 0.75 +0.1
118,102 + H281DRAFT_05364 0.79 +0.7
118,102 + H281DRAFT_05364 0.79 +0.1
118,220 - H281DRAFT_05364 0.87 +0.1
118,418 - -0.4
118,691 + H281DRAFT_05365 0.39 +0.4
118,709 - H281DRAFT_05365 0.43 +0.6
118,709 - H281DRAFT_05365 0.43 -0.7
118,802 + H281DRAFT_05365 0.62 +0.1
118,803 - H281DRAFT_05365 0.62 +0.9
118,813 + H281DRAFT_05365 0.64 +0.6
118,813 + H281DRAFT_05365 0.64 +0.4
118,885 + H281DRAFT_05365 0.78 +0.4
118,885 + H281DRAFT_05365 0.78 +0.9
118,886 - H281DRAFT_05365 0.78 +0.0
118,886 - H281DRAFT_05365 0.78 -0.2
118,984 + +0.9
118,985 - +0.6
118,985 - -0.7
119,058 + +0.9
119,059 - +0.4
119,283 + H281DRAFT_05366 0.42 +0.7
119,283 + H281DRAFT_05366 0.42 +0.7
119,284 - H281DRAFT_05366 0.43 -0.3
119,284 - H281DRAFT_05366 0.43 +0.2
119,284 - H281DRAFT_05366 0.43 +0.4
119,284 - H281DRAFT_05366 0.43 -0.7
119,326 - H281DRAFT_05366 0.51 -0.5
119,386 + H281DRAFT_05366 0.64 +0.6
119,387 - H281DRAFT_05366 0.64 +0.7
119,557 - +0.6
119,664 - +0.5
119,688 + +0.4
119,691 + +2.7
119,722 - -0.6
119,902 + H281DRAFT_05367 0.13 +0.4
119,902 + H281DRAFT_05367 0.13 +0.7
119,903 - H281DRAFT_05367 0.13 -0.6
119,903 - H281DRAFT_05367 0.13 +0.4
119,903 - H281DRAFT_05367 0.13 +0.7
119,904 + H281DRAFT_05367 0.13 +0.4
119,904 + H281DRAFT_05367 0.13 +1.4
119,914 - H281DRAFT_05367 0.13 +0.5
119,914 - -1.9

Or see this region's nucleotide sequence