Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05349

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05348 and H281DRAFT_05349 are separated by 220 nucleotidesH281DRAFT_05349 and H281DRAFT_05350 overlap by 31 nucleotides H281DRAFT_05348: H281DRAFT_05348 - Hypoxanthine phosphoribosyltransferase, at 100,310 to 101,263 _05348 H281DRAFT_05349: H281DRAFT_05349 - hypothetical protein, at 101,484 to 102,026 _05349 H281DRAFT_05350: H281DRAFT_05350 - Signal transduction histidine kinase, at 101,996 to 103,846 _05350 Position (kb) 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1at 100.836 kb on + strand, within H281DRAFT_05348at 101.379 kb on - strandat 101.379 kb on - strandat 101.379 kb on - strandat 101.473 kb on + strandat 101.473 kb on + strandat 101.494 kb on + strandat 101.665 kb on - strand, within H281DRAFT_05349at 101.768 kb on + strand, within H281DRAFT_05349at 101.827 kb on - strand, within H281DRAFT_05349at 101.832 kb on + strand, within H281DRAFT_05349at 101.832 kb on + strand, within H281DRAFT_05349at 102.052 kb on - strandat 102.162 kb on - strandat 102.173 kb on + strandat 102.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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100,836 + H281DRAFT_05348 0.55 +1.6
101,379 - -0.4
101,379 - +1.7
101,379 - -0.7
101,473 + +0.0
101,473 + +0.5
101,494 + +0.1
101,665 - H281DRAFT_05349 0.33 +1.0
101,768 + H281DRAFT_05349 0.52 +0.3
101,827 - H281DRAFT_05349 0.63 +1.1
101,832 + H281DRAFT_05349 0.64 -0.1
101,832 + H281DRAFT_05349 0.64 -1.5
102,052 - -3.3
102,162 - +1.5
102,173 + +1.3
102,174 - -0.6

Or see this region's nucleotide sequence