Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05206

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05205 and H281DRAFT_05206 are separated by 152 nucleotidesH281DRAFT_05206 and H281DRAFT_05207 are separated by 22 nucleotidesH281DRAFT_05207 and H281DRAFT_05208 are separated by 159 nucleotides H281DRAFT_05205: H281DRAFT_05205 - beta subunit of N-acylethanolamine-hydrolyzing acid amidase, at 166,016 to 167,353 _05205 H281DRAFT_05206: H281DRAFT_05206 - chloride channel protein, CIC family, at 167,506 to 169,329 _05206 H281DRAFT_05207: H281DRAFT_05207 - glutathione S-transferase, at 169,352 to 170,089 _05207 H281DRAFT_05208: H281DRAFT_05208 - conserved hypothetical integral membrane protein, at 170,249 to 171,337 _05208 Position (kb) 167 168 169 170Strain fitness (log2 ratio) -2 -1 0 1 2at 166.536 kb on + strandat 166.537 kb on - strand, within H281DRAFT_05205at 166.687 kb on - strand, within H281DRAFT_05205at 167.039 kb on + strand, within H281DRAFT_05205at 167.049 kb on + strand, within H281DRAFT_05205at 167.401 kb on + strandat 167.442 kb on - strandat 167.553 kb on + strandat 167.554 kb on - strandat 167.555 kb on + strandat 167.690 kb on + strand, within H281DRAFT_05206at 167.795 kb on + strand, within H281DRAFT_05206at 167.795 kb on + strand, within H281DRAFT_05206at 167.801 kb on + strand, within H281DRAFT_05206at 167.801 kb on + strand, within H281DRAFT_05206at 167.824 kb on + strand, within H281DRAFT_05206at 167.993 kb on + strand, within H281DRAFT_05206at 167.993 kb on + strand, within H281DRAFT_05206at 168.601 kb on - strand, within H281DRAFT_05206at 168.603 kb on + strand, within H281DRAFT_05206at 168.604 kb on - strand, within H281DRAFT_05206at 168.604 kb on - strand, within H281DRAFT_05206at 168.704 kb on + strand, within H281DRAFT_05206at 168.714 kb on + strand, within H281DRAFT_05206at 168.715 kb on - strand, within H281DRAFT_05206at 168.935 kb on + strand, within H281DRAFT_05206at 168.936 kb on - strand, within H281DRAFT_05206at 169.405 kb on + strandat 169.530 kb on + strand, within H281DRAFT_05207at 169.531 kb on - strand, within H281DRAFT_05207at 169.600 kb on + strand, within H281DRAFT_05207at 169.639 kb on - strand, within H281DRAFT_05207at 169.714 kb on - strand, within H281DRAFT_05207at 169.717 kb on - strand, within H281DRAFT_05207at 169.717 kb on - strand, within H281DRAFT_05207at 169.800 kb on + strand, within H281DRAFT_05207at 169.800 kb on + strand, within H281DRAFT_05207at 169.801 kb on - strand, within H281DRAFT_05207at 169.848 kb on + strand, within H281DRAFT_05207at 169.848 kb on + strand, within H281DRAFT_05207at 169.848 kb on + strand, within H281DRAFT_05207at 169.849 kb on - strand, within H281DRAFT_05207at 169.849 kb on - strand, within H281DRAFT_05207at 169.849 kb on - strand, within H281DRAFT_05207at 169.849 kb on - strand, within H281DRAFT_05207at 170.005 kb on - strand, within H281DRAFT_05207at 170.005 kb on - strand, within H281DRAFT_05207at 170.071 kb on - strandat 170.074 kb on - strandat 170.250 kb on + strandat 170.306 kb on + strandat 170.306 kb on + strandat 170.307 kb on - strandat 170.307 kb on - strandat 170.310 kb on + strandat 170.311 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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166,536 + -1.1
166,537 - H281DRAFT_05205 0.39 -0.4
166,687 - H281DRAFT_05205 0.50 +0.2
167,039 + H281DRAFT_05205 0.76 +0.7
167,049 + H281DRAFT_05205 0.77 +1.8
167,401 + -0.8
167,442 - +0.7
167,553 + -0.4
167,554 - -0.6
167,555 + -0.0
167,690 + H281DRAFT_05206 0.10 +0.0
167,795 + H281DRAFT_05206 0.16 -0.7
167,795 + H281DRAFT_05206 0.16 +1.3
167,801 + H281DRAFT_05206 0.16 +0.0
167,801 + H281DRAFT_05206 0.16 -0.6
167,824 + H281DRAFT_05206 0.17 -0.2
167,993 + H281DRAFT_05206 0.27 -0.1
167,993 + H281DRAFT_05206 0.27 -0.3
168,601 - H281DRAFT_05206 0.60 -0.4
168,603 + H281DRAFT_05206 0.60 +0.4
168,604 - H281DRAFT_05206 0.60 +0.2
168,604 - H281DRAFT_05206 0.60 +0.7
168,704 + H281DRAFT_05206 0.66 -1.0
168,714 + H281DRAFT_05206 0.66 -0.5
168,715 - H281DRAFT_05206 0.66 +0.5
168,935 + H281DRAFT_05206 0.78 +0.1
168,936 - H281DRAFT_05206 0.78 -2.5
169,405 + -0.6
169,530 + H281DRAFT_05207 0.24 -2.3
169,531 - H281DRAFT_05207 0.24 +0.4
169,600 + H281DRAFT_05207 0.34 +0.6
169,639 - H281DRAFT_05207 0.39 -0.8
169,714 - H281DRAFT_05207 0.49 -0.2
169,717 - H281DRAFT_05207 0.49 +1.9
169,717 - H281DRAFT_05207 0.49 +0.3
169,800 + H281DRAFT_05207 0.61 -0.0
169,800 + H281DRAFT_05207 0.61 +0.0
169,801 - H281DRAFT_05207 0.61 -1.2
169,848 + H281DRAFT_05207 0.67 +0.6
169,848 + H281DRAFT_05207 0.67 +0.2
169,848 + H281DRAFT_05207 0.67 -0.7
169,849 - H281DRAFT_05207 0.67 +0.1
169,849 - H281DRAFT_05207 0.67 +0.4
169,849 - H281DRAFT_05207 0.67 +0.2
169,849 - H281DRAFT_05207 0.67 +0.4
170,005 - H281DRAFT_05207 0.88 -1.0
170,005 - H281DRAFT_05207 0.88 -0.3
170,071 - +1.7
170,074 - +0.9
170,250 + -0.6
170,306 + +0.1
170,306 + -0.2
170,307 - -0.5
170,307 - +0.2
170,310 + +0.4
170,311 - -0.7

Or see this region's nucleotide sequence