Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04997

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04996 and H281DRAFT_04997 are separated by 52 nucleotidesH281DRAFT_04997 and H281DRAFT_04998 are separated by 214 nucleotides H281DRAFT_04996: H281DRAFT_04996 - type III secretion protein C, at 181,046 to 182,830 _04996 H281DRAFT_04997: H281DRAFT_04997 - AraC-type DNA-binding protein, at 182,883 to 184,328 _04997 H281DRAFT_04998: H281DRAFT_04998 - type III secretion protein T, at 184,543 to 185,394 _04998 Position (kb) 182 183 184 185Strain fitness (log2 ratio) -2 -1 0 1at 182.696 kb on + strandat 183.388 kb on + strand, within H281DRAFT_04997at 184.932 kb on - strand, within H281DRAFT_04998

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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182,696 + -2.3
183,388 + H281DRAFT_04997 0.35 -1.8
184,932 - H281DRAFT_04998 0.46 +0.4

Or see this region's nucleotide sequence