Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04647

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04645 and H281DRAFT_04646 are separated by 44 nucleotidesH281DRAFT_04646 and H281DRAFT_04647 are separated by 40 nucleotidesH281DRAFT_04647 and H281DRAFT_04648 are separated by 10 nucleotides H281DRAFT_04645: H281DRAFT_04645 - hypothetical protein, at 45,527 to 46,414 _04645 H281DRAFT_04646: H281DRAFT_04646 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 46,459 to 47,217 _04646 H281DRAFT_04647: H281DRAFT_04647 - D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase, at 47,258 to 47,812 _04647 H281DRAFT_04648: H281DRAFT_04648 - glycyl-tRNA synthetase beta chain, at 47,823 to 49,925 _04648 Position (kb) 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 46.399 kb on + strandat 46.616 kb on - strand, within H281DRAFT_04646at 46.616 kb on - strand, within H281DRAFT_04646at 47.200 kb on - strandat 47.231 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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46,399 + +2.5
46,616 - H281DRAFT_04646 0.21 -1.0
46,616 - H281DRAFT_04646 0.21 +1.0
47,200 - -1.9
47,231 - +0.2

Or see this region's nucleotide sequence