Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04485

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04483 and H281DRAFT_04484 are separated by 37 nucleotidesH281DRAFT_04484 and H281DRAFT_04485 are separated by 240 nucleotidesH281DRAFT_04485 and H281DRAFT_04486 overlap by 4 nucleotides H281DRAFT_04483: H281DRAFT_04483 - tRNA-processing RNAse BN, at 213,825 to 215,135 _04483 H281DRAFT_04484: H281DRAFT_04484 - hypothetical protein, at 215,173 to 215,493 _04484 H281DRAFT_04485: H281DRAFT_04485 - Pimeloyl-ACP methyl ester carboxylesterase, at 215,734 to 216,567 _04485 H281DRAFT_04486: H281DRAFT_04486 - O-acetylhomoserine sulfhydrylase, at 216,564 to 217,961 _04486 Position (kb) 215 216 217Strain fitness (log2 ratio) -3 -2 -1 0 1at 214.755 kb on + strand, within H281DRAFT_04483at 214.923 kb on + strand, within H281DRAFT_04483at 215.133 kb on + strandat 215.134 kb on - strandat 215.175 kb on - strandat 215.191 kb on + strandat 215.232 kb on + strand, within H281DRAFT_04484at 215.232 kb on + strand, within H281DRAFT_04484at 215.235 kb on - strand, within H281DRAFT_04484at 215.435 kb on + strand, within H281DRAFT_04484at 215.435 kb on + strand, within H281DRAFT_04484at 215.435 kb on + strand, within H281DRAFT_04484at 215.436 kb on - strand, within H281DRAFT_04484at 215.444 kb on + strand, within H281DRAFT_04484at 215.484 kb on + strandat 215.838 kb on + strand, within H281DRAFT_04485at 215.839 kb on - strand, within H281DRAFT_04485at 215.839 kb on - strand, within H281DRAFT_04485at 215.839 kb on - strand, within H281DRAFT_04485at 215.839 kb on - strand, within H281DRAFT_04485at 215.976 kb on - strand, within H281DRAFT_04485at 215.979 kb on + strand, within H281DRAFT_04485at 215.979 kb on + strand, within H281DRAFT_04485at 215.980 kb on - strand, within H281DRAFT_04485at 215.980 kb on - strand, within H281DRAFT_04485at 215.980 kb on - strand, within H281DRAFT_04485at 216.434 kb on + strand, within H281DRAFT_04485at 216.434 kb on + strand, within H281DRAFT_04485at 216.454 kb on + strand, within H281DRAFT_04485at 216.455 kb on - strand, within H281DRAFT_04485at 216.459 kb on + strand, within H281DRAFT_04485at 216.459 kb on + strand, within H281DRAFT_04485at 216.530 kb on + strandat 216.530 kb on + strandat 216.531 kb on - strandat 216.536 kb on + strandat 216.536 kb on + strandat 216.922 kb on - strand, within H281DRAFT_04486at 217.203 kb on + strand, within H281DRAFT_04486at 217.203 kb on + strand, within H281DRAFT_04486at 217.222 kb on + strand, within H281DRAFT_04486at 217.281 kb on + strand, within H281DRAFT_04486at 217.282 kb on - strand, within H281DRAFT_04486at 217.340 kb on - strand, within H281DRAFT_04486at 217.340 kb on - strand, within H281DRAFT_04486at 217.378 kb on + strand, within H281DRAFT_04486at 217.379 kb on - strand, within H281DRAFT_04486

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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214,755 + H281DRAFT_04483 0.71 -0.1
214,923 + H281DRAFT_04483 0.84 +0.2
215,133 + +0.7
215,134 - -0.3
215,175 - -0.6
215,191 + -0.4
215,232 + H281DRAFT_04484 0.18 -0.3
215,232 + H281DRAFT_04484 0.18 +0.6
215,235 - H281DRAFT_04484 0.19 +1.3
215,435 + H281DRAFT_04484 0.82 -0.0
215,435 + H281DRAFT_04484 0.82 +0.4
215,435 + H281DRAFT_04484 0.82 -0.4
215,436 - H281DRAFT_04484 0.82 +1.2
215,444 + H281DRAFT_04484 0.84 +0.7
215,484 + +1.4
215,838 + H281DRAFT_04485 0.12 +0.5
215,839 - H281DRAFT_04485 0.13 +0.7
215,839 - H281DRAFT_04485 0.13 -0.5
215,839 - H281DRAFT_04485 0.13 -0.3
215,839 - H281DRAFT_04485 0.13 -0.0
215,976 - H281DRAFT_04485 0.29 -0.3
215,979 + H281DRAFT_04485 0.29 +0.7
215,979 + H281DRAFT_04485 0.29 -0.4
215,980 - H281DRAFT_04485 0.29 +1.4
215,980 - H281DRAFT_04485 0.29 -0.0
215,980 - H281DRAFT_04485 0.29 +0.2
216,434 + H281DRAFT_04485 0.84 -1.6
216,434 + H281DRAFT_04485 0.84 +0.1
216,454 + H281DRAFT_04485 0.86 +1.1
216,455 - H281DRAFT_04485 0.86 -0.8
216,459 + H281DRAFT_04485 0.87 -1.0
216,459 + H281DRAFT_04485 0.87 +0.5
216,530 + +0.1
216,530 + -0.1
216,531 - -3.4
216,536 + +0.3
216,536 + -0.9
216,922 - H281DRAFT_04486 0.26 +0.1
217,203 + H281DRAFT_04486 0.46 +0.1
217,203 + H281DRAFT_04486 0.46 -0.6
217,222 + H281DRAFT_04486 0.47 -0.7
217,281 + H281DRAFT_04486 0.51 +0.4
217,282 - H281DRAFT_04486 0.51 +0.1
217,340 - H281DRAFT_04486 0.56 +0.6
217,340 - H281DRAFT_04486 0.56 +0.1
217,378 + H281DRAFT_04486 0.58 +0.5
217,379 - H281DRAFT_04486 0.58 -1.4

Or see this region's nucleotide sequence