Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04477 and H281DRAFT_04478 are separated by 224 nucleotides H281DRAFT_04478 and H281DRAFT_04479 are separated by 80 nucleotides H281DRAFT_04479 and H281DRAFT_04480 are separated by 67 nucleotides
H281DRAFT_04477: H281DRAFT_04477 - transcriptional regulator, LysR family, at 208,865 to 209,803
_04477
H281DRAFT_04478: H281DRAFT_04478 - hypothetical protein, at 210,028 to 210,186
_04478
H281DRAFT_04479: H281DRAFT_04479 - DNA repair exonuclease, at 210,267 to 211,085
_04479
H281DRAFT_04480: H281DRAFT_04480 - FAD/FMN-containing dehydrogenase, at 211,153 to 212,577
_04480
Position (kb) 210
211
212 Strain fitness (log2 ratio) -2
-1
0
1
2 at 209.359 kb on + strand, within H281DRAFT_04477 at 209.359 kb on + strand, within H281DRAFT_04477 at 209.359 kb on + strand, within H281DRAFT_04477 at 209.360 kb on - strand, within H281DRAFT_04477 at 209.360 kb on - strand, within H281DRAFT_04477 at 209.378 kb on + strand, within H281DRAFT_04477 at 209.379 kb on - strand, within H281DRAFT_04477 at 209.652 kb on - strand, within H281DRAFT_04477 at 209.676 kb on - strand, within H281DRAFT_04477 at 209.684 kb on + strand, within H281DRAFT_04477 at 209.699 kb on + strand, within H281DRAFT_04477 at 209.886 kb on - strand at 209.886 kb on - strand at 209.886 kb on - strand at 209.914 kb on + strand at 209.977 kb on - strand at 209.977 kb on - strand at 210.268 kb on + strand at 210.268 kb on + strand at 210.268 kb on + strand at 210.269 kb on - strand at 210.270 kb on + strand at 210.270 kb on + strand at 210.270 kb on + strand at 210.270 kb on + strand at 210.271 kb on - strand at 210.411 kb on + strand, within H281DRAFT_04479 at 210.412 kb on - strand, within H281DRAFT_04479 at 210.481 kb on + strand, within H281DRAFT_04479 at 210.482 kb on - strand, within H281DRAFT_04479 at 210.640 kb on + strand, within H281DRAFT_04479 at 210.640 kb on + strand, within H281DRAFT_04479 at 210.641 kb on - strand, within H281DRAFT_04479 at 210.901 kb on + strand, within H281DRAFT_04479 at 210.902 kb on - strand, within H281DRAFT_04479 at 210.902 kb on - strand, within H281DRAFT_04479 at 210.923 kb on - strand, within H281DRAFT_04479 at 211.154 kb on + strand at 211.155 kb on - strand at 211.250 kb on + strand at 211.251 kb on - strand at 211.331 kb on + strand, within H281DRAFT_04480 at 211.359 kb on - strand, within H281DRAFT_04480 at 211.359 kb on - strand, within H281DRAFT_04480 at 211.409 kb on + strand, within H281DRAFT_04480 at 211.410 kb on - strand, within H281DRAFT_04480 at 211.410 kb on - strand, within H281DRAFT_04480 at 211.410 kb on - strand, within H281DRAFT_04480 at 211.410 kb on - strand, within H281DRAFT_04480 at 211.575 kb on + strand, within H281DRAFT_04480 at 211.575 kb on + strand, within H281DRAFT_04480 at 211.576 kb on - strand, within H281DRAFT_04480 at 211.828 kb on + strand, within H281DRAFT_04480
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 209,359 + H281DRAFT_04477 0.53 -1.6 209,359 + H281DRAFT_04477 0.53 -1.7 209,359 + H281DRAFT_04477 0.53 -0.9 209,360 - H281DRAFT_04477 0.53 -0.3 209,360 - H281DRAFT_04477 0.53 -0.5 209,378 + H281DRAFT_04477 0.55 -1.4 209,379 - H281DRAFT_04477 0.55 -1.5 209,652 - H281DRAFT_04477 0.84 -0.6 209,676 - H281DRAFT_04477 0.86 -2.4 209,684 + H281DRAFT_04477 0.87 +1.8 209,699 + H281DRAFT_04477 0.89 +0.5 209,886 - -1.1 209,886 - +0.2 209,886 - +0.3 209,914 + +1.2 209,977 - +0.7 209,977 - +0.0 210,268 + -0.0 210,268 + +0.0 210,268 + +0.0 210,269 - +0.2 210,270 + -0.6 210,270 + +1.0 210,270 + +1.0 210,270 + -0.1 210,271 - +0.9 210,411 + H281DRAFT_04479 0.18 -0.2 210,412 - H281DRAFT_04479 0.18 -0.4 210,481 + H281DRAFT_04479 0.26 -0.2 210,482 - H281DRAFT_04479 0.26 +0.2 210,640 + H281DRAFT_04479 0.46 +0.3 210,640 + H281DRAFT_04479 0.46 +0.4 210,641 - H281DRAFT_04479 0.46 -1.1 210,901 + H281DRAFT_04479 0.77 -0.4 210,902 - H281DRAFT_04479 0.78 +0.2 210,902 - H281DRAFT_04479 0.78 -0.1 210,923 - H281DRAFT_04479 0.80 -0.3 211,154 + +0.2 211,155 - +1.0 211,250 + +0.1 211,251 - +0.3 211,331 + H281DRAFT_04480 0.12 -0.2 211,359 - H281DRAFT_04480 0.14 -1.4 211,359 - H281DRAFT_04480 0.14 -1.7 211,409 + H281DRAFT_04480 0.18 -1.7 211,410 - H281DRAFT_04480 0.18 -0.5 211,410 - H281DRAFT_04480 0.18 -0.8 211,410 - H281DRAFT_04480 0.18 -0.2 211,410 - H281DRAFT_04480 0.18 -1.7 211,575 + H281DRAFT_04480 0.30 +1.2 211,575 + H281DRAFT_04480 0.30 +0.3 211,576 - H281DRAFT_04480 0.30 +1.5 211,828 + H281DRAFT_04480 0.47 -0.0
Or see this region's nucleotide sequence