Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03859 and H281DRAFT_03860 are separated by 581 nucleotides H281DRAFT_03860 and H281DRAFT_03861 are separated by 289 nucleotides H281DRAFT_03861 and H281DRAFT_03862 are separated by 307 nucleotides
H281DRAFT_03859: H281DRAFT_03859 - hypothetical protein, at 388,480 to 389,343
_03859
H281DRAFT_03860: H281DRAFT_03860 - hypothetical protein, at 389,925 to 390,149
_03860
H281DRAFT_03861: H281DRAFT_03861 - cold-shock DNA-binding protein family, at 390,439 to 390,642
_03861
H281DRAFT_03862: H281DRAFT_03862 - Threonine/homoserine/homoserine lactone efflux protein, at 390,950 to 391,639
_03862
Position (kb) 389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 389.317 kb on + strand at 389.318 kb on - strand at 389.318 kb on - strand at 389.350 kb on - strand at 389.353 kb on + strand at 389.353 kb on + strand at 389.400 kb on - strand at 389.553 kb on + strand at 389.554 kb on - strand at 389.669 kb on - strand at 389.692 kb on + strand at 389.692 kb on + strand at 389.692 kb on + strand at 389.753 kb on + strand at 389.753 kb on + strand at 389.753 kb on + strand at 389.753 kb on + strand at 389.754 kb on - strand at 389.754 kb on - strand at 389.754 kb on - strand at 389.777 kb on - strand at 389.829 kb on + strand at 389.829 kb on + strand at 389.830 kb on - strand at 389.830 kb on - strand at 389.830 kb on - strand at 389.836 kb on - strand at 389.916 kb on - strand at 390.020 kb on - strand, within H281DRAFT_03860 at 390.077 kb on + strand, within H281DRAFT_03860 at 390.078 kb on - strand, within H281DRAFT_03860 at 390.125 kb on - strand, within H281DRAFT_03860 at 390.153 kb on - strand at 390.159 kb on + strand at 390.261 kb on - strand at 390.440 kb on + strand at 390.440 kb on + strand at 390.441 kb on - strand at 390.441 kb on - strand at 390.441 kb on - strand at 390.624 kb on + strand at 390.624 kb on + strand at 390.625 kb on - strand at 390.826 kb on - strand at 391.047 kb on + strand, within H281DRAFT_03862 at 391.048 kb on - strand, within H281DRAFT_03862 at 391.048 kb on - strand, within H281DRAFT_03862 at 391.096 kb on - strand, within H281DRAFT_03862 at 391.096 kb on - strand, within H281DRAFT_03862 at 391.140 kb on + strand, within H281DRAFT_03862 at 391.140 kb on + strand, within H281DRAFT_03862
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 389,317 + -1.0 389,318 - -0.7 389,318 - +0.4 389,350 - -0.0 389,353 + +0.3 389,353 + +1.1 389,400 - -0.0 389,553 + +0.2 389,554 - +0.2 389,669 - -1.9 389,692 + +0.8 389,692 + +0.4 389,692 + +0.6 389,753 + +0.9 389,753 + -0.6 389,753 + -0.2 389,753 + +0.4 389,754 - -0.1 389,754 - -0.3 389,754 - +0.2 389,777 - +0.2 389,829 + +0.6 389,829 + +1.1 389,830 - +0.2 389,830 - +1.4 389,830 - +0.9 389,836 - +0.0 389,916 - +0.1 390,020 - H281DRAFT_03860 0.42 -0.2 390,077 + H281DRAFT_03860 0.68 -0.5 390,078 - H281DRAFT_03860 0.68 +1.2 390,125 - H281DRAFT_03860 0.89 +0.1 390,153 - -0.8 390,159 + -0.1 390,261 - -0.2 390,440 + -0.5 390,440 + -0.2 390,441 - +0.7 390,441 - +3.0 390,441 - +0.4 390,624 + -3.6 390,624 + -0.1 390,625 - +0.2 390,826 - -0.8 391,047 + H281DRAFT_03862 0.14 -0.2 391,048 - H281DRAFT_03862 0.14 -0.3 391,048 - H281DRAFT_03862 0.14 +0.6 391,096 - H281DRAFT_03862 0.21 +0.7 391,096 - H281DRAFT_03862 0.21 +1.0 391,140 + H281DRAFT_03862 0.28 +0.7 391,140 + H281DRAFT_03862 0.28 +0.7
Or see this region's nucleotide sequence