Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03743 and H281DRAFT_03744 are separated by 342 nucleotides H281DRAFT_03744 and H281DRAFT_03745 are separated by 100 nucleotides H281DRAFT_03745 and H281DRAFT_03746 overlap by 4 nucleotides
H281DRAFT_03743: H281DRAFT_03743 - hypothetical protein, at 259,271 to 260,077
_03743
H281DRAFT_03744: H281DRAFT_03744 - Uncharacterized conserved protein, DUF1330 family, at 260,420 to 260,713
_03744
H281DRAFT_03745: H281DRAFT_03745 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 260,814 to 261,665
_03745
H281DRAFT_03746: H281DRAFT_03746 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 261,662 to 262,552
_03746
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 260.009 kb on + strand at 260.078 kb on - strand at 260.354 kb on - strand at 260.378 kb on + strand at 260.405 kb on + strand at 260.406 kb on - strand at 260.448 kb on - strand at 260.606 kb on + strand, within H281DRAFT_03744 at 260.734 kb on + strand at 260.815 kb on + strand at 260.815 kb on + strand at 260.815 kb on + strand at 261.036 kb on - strand, within H281DRAFT_03745 at 261.343 kb on + strand, within H281DRAFT_03745 at 261.702 kb on + strand at 261.799 kb on - strand, within H281DRAFT_03746 at 261.811 kb on + strand, within H281DRAFT_03746 at 261.812 kb on - strand, within H281DRAFT_03746 at 261.812 kb on - strand, within H281DRAFT_03746 at 261.877 kb on - strand, within H281DRAFT_03746 at 261.984 kb on + strand, within H281DRAFT_03746 at 262.332 kb on - strand, within H281DRAFT_03746
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 260,009 + -1.3 260,078 - +0.0 260,354 - -3.6 260,378 + +0.5 260,405 + -0.6 260,406 - -1.0 260,448 - +1.5 260,606 + H281DRAFT_03744 0.63 +0.9 260,734 + +0.9 260,815 + -1.2 260,815 + -0.7 260,815 + +0.1 261,036 - H281DRAFT_03745 0.26 +1.4 261,343 + H281DRAFT_03745 0.62 +1.2 261,702 + +0.1 261,799 - H281DRAFT_03746 0.15 -1.5 261,811 + H281DRAFT_03746 0.17 +0.6 261,812 - H281DRAFT_03746 0.17 +0.9 261,812 - H281DRAFT_03746 0.17 +0.1 261,877 - H281DRAFT_03746 0.24 -0.1 261,984 + H281DRAFT_03746 0.36 +0.1 262,332 - H281DRAFT_03746 0.75 -1.8
Or see this region's nucleotide sequence