Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03420 and H281DRAFT_03421 are separated by 51 nucleotides H281DRAFT_03421 and H281DRAFT_03422 are separated by 222 nucleotides
H281DRAFT_03420: H281DRAFT_03420 - 4-oxalomesaconate hydratase (EC 4.2.1.83), at 493,572 to 494,597
_03420
H281DRAFT_03421: H281DRAFT_03421 - transcriptional regulator, IclR family, at 494,649 to 495,494
_03421
H281DRAFT_03422: H281DRAFT_03422 - dihydroxyacid dehydratase (EC 4.2.1.9), at 495,717 to 497,495
_03422
Position (kb) 494
495
496 Strain fitness (log2 ratio) -1
0
1 at 493.779 kb on + strand, within H281DRAFT_03420 at 493.780 kb on - strand, within H281DRAFT_03420 at 493.780 kb on - strand, within H281DRAFT_03420 at 493.787 kb on + strand, within H281DRAFT_03420 at 494.018 kb on - strand, within H281DRAFT_03420 at 494.087 kb on - strand, within H281DRAFT_03420 at 495.230 kb on - strand, within H281DRAFT_03421 at 495.240 kb on + strand, within H281DRAFT_03421 at 495.240 kb on + strand, within H281DRAFT_03421 at 495.240 kb on + strand, within H281DRAFT_03421 at 495.344 kb on - strand, within H281DRAFT_03421 at 495.483 kb on - strand at 495.494 kb on + strand at 495.494 kb on + strand at 495.495 kb on - strand at 495.584 kb on + strand at 495.606 kb on + strand at 495.762 kb on + strand at 495.834 kb on + strand at 496.015 kb on - strand, within H281DRAFT_03422 at 496.468 kb on + strand, within H281DRAFT_03422 at 496.469 kb on - strand, within H281DRAFT_03422
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 493,779 + H281DRAFT_03420 0.20 +0.6 493,780 - H281DRAFT_03420 0.20 -0.1 493,780 - H281DRAFT_03420 0.20 -0.4 493,787 + H281DRAFT_03420 0.21 -0.3 494,018 - H281DRAFT_03420 0.43 +0.8 494,087 - H281DRAFT_03420 0.50 +0.1 495,230 - H281DRAFT_03421 0.69 -0.3 495,240 + H281DRAFT_03421 0.70 +0.2 495,240 + H281DRAFT_03421 0.70 -0.4 495,240 + H281DRAFT_03421 0.70 +0.4 495,344 - H281DRAFT_03421 0.82 +0.9 495,483 - +0.5 495,494 + +0.2 495,494 + -1.2 495,495 - -0.1 495,584 + -0.3 495,606 + +0.4 495,762 + -0.0 495,834 + +0.5 496,015 - H281DRAFT_03422 0.17 +1.5 496,468 + H281DRAFT_03422 0.42 +0.2 496,469 - H281DRAFT_03422 0.42 -0.3
Or see this region's nucleotide sequence