Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03368 and H281DRAFT_03369 are separated by 20 nucleotides H281DRAFT_03369 and H281DRAFT_03370 are separated by 9 nucleotides
H281DRAFT_03368: H281DRAFT_03368 - Uncharacterised protein family protein, at 430,023 to 430,307
_03368
H281DRAFT_03369: H281DRAFT_03369 - membrane fusion protein, multidrug efflux system, at 430,328 to 431,386
_03369
H281DRAFT_03370: H281DRAFT_03370 - multidrug resistance protein MdtO, at 431,396 to 433,504
_03370
Position (kb) 430
431
432 Strain fitness (log2 ratio) -1
0
1
2 at 429.526 kb on + strand at 429.703 kb on - strand at 429.761 kb on + strand at 429.762 kb on - strand at 429.762 kb on - strand at 429.959 kb on + strand at 430.135 kb on - strand, within H281DRAFT_03368 at 430.157 kb on + strand, within H281DRAFT_03368 at 430.248 kb on + strand, within H281DRAFT_03368 at 430.377 kb on + strand at 430.398 kb on + strand at 430.416 kb on + strand at 430.416 kb on + strand at 430.454 kb on + strand, within H281DRAFT_03369 at 430.668 kb on - strand, within H281DRAFT_03369 at 430.745 kb on - strand, within H281DRAFT_03369 at 430.769 kb on + strand, within H281DRAFT_03369 at 430.770 kb on - strand, within H281DRAFT_03369 at 430.770 kb on - strand, within H281DRAFT_03369 at 430.872 kb on + strand, within H281DRAFT_03369 at 431.063 kb on + strand, within H281DRAFT_03369 at 431.431 kb on - strand at 431.591 kb on + strand at 431.591 kb on + strand at 431.754 kb on - strand, within H281DRAFT_03370 at 431.814 kb on - strand, within H281DRAFT_03370 at 431.814 kb on - strand, within H281DRAFT_03370 at 432.163 kb on - strand, within H281DRAFT_03370 at 432.302 kb on + strand, within H281DRAFT_03370
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 429,526 + -0.3 429,703 - -1.0 429,761 + +0.4 429,762 - -0.7 429,762 - -0.9 429,959 + +1.6 430,135 - H281DRAFT_03368 0.39 -0.3 430,157 + H281DRAFT_03368 0.47 +0.5 430,248 + H281DRAFT_03368 0.79 -0.3 430,377 + -1.1 430,398 + +0.0 430,416 + -0.2 430,416 + -1.0 430,454 + H281DRAFT_03369 0.12 +0.2 430,668 - H281DRAFT_03369 0.32 -0.0 430,745 - H281DRAFT_03369 0.39 +0.7 430,769 + H281DRAFT_03369 0.42 +0.2 430,770 - H281DRAFT_03369 0.42 -1.1 430,770 - H281DRAFT_03369 0.42 +0.0 430,872 + H281DRAFT_03369 0.51 -0.2 431,063 + H281DRAFT_03369 0.69 +0.2 431,431 - -0.5 431,591 + +0.7 431,591 + +0.6 431,754 - H281DRAFT_03370 0.17 +2.0 431,814 - H281DRAFT_03370 0.20 -0.6 431,814 - H281DRAFT_03370 0.20 -0.1 432,163 - H281DRAFT_03370 0.36 -0.8 432,302 + H281DRAFT_03370 0.43 +0.3
Or see this region's nucleotide sequence