Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03125 and H281DRAFT_03126 overlap by 4 nucleotides H281DRAFT_03126 and H281DRAFT_03127 are separated by 1 nucleotides H281DRAFT_03127 and H281DRAFT_03128 are separated by 2 nucleotides
H281DRAFT_03125: H281DRAFT_03125 - oligopeptide transport system ATP-binding protein, at 158,822 to 159,820
_03125
H281DRAFT_03126: H281DRAFT_03126 - oligopeptide transport system ATP-binding protein, at 159,817 to 160,818
_03126
H281DRAFT_03127: H281DRAFT_03127 - oligopeptide transport system permease protein, at 160,820 to 161,734
_03127
H281DRAFT_03128: H281DRAFT_03128 - oligopeptide transport system permease protein, at 161,737 to 162,675
_03128
Position (kb) 159
160
161 Strain fitness (log2 ratio) -1
0
1
2 at 159.821 kb on - strand at 159.821 kb on - strand at 160.074 kb on - strand, within H281DRAFT_03126 at 160.136 kb on + strand, within H281DRAFT_03126 at 160.136 kb on + strand, within H281DRAFT_03126 at 160.137 kb on - strand, within H281DRAFT_03126 at 160.371 kb on - strand, within H281DRAFT_03126 at 161.090 kb on - strand, within H281DRAFT_03127 at 161.236 kb on - strand, within H281DRAFT_03127 at 161.284 kb on - strand, within H281DRAFT_03127 at 161.296 kb on - strand, within H281DRAFT_03127 at 161.346 kb on + strand, within H281DRAFT_03127
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 159,821 - -1.2 159,821 - -0.1 160,074 - H281DRAFT_03126 0.26 -0.3 160,136 + H281DRAFT_03126 0.32 +0.0 160,136 + H281DRAFT_03126 0.32 -0.0 160,137 - H281DRAFT_03126 0.32 -0.3 160,371 - H281DRAFT_03126 0.55 +1.2 161,090 - H281DRAFT_03127 0.30 -1.0 161,236 - H281DRAFT_03127 0.45 -0.2 161,284 - H281DRAFT_03127 0.51 -0.1 161,296 - H281DRAFT_03127 0.52 -0.1 161,346 + H281DRAFT_03127 0.57 +2.0
Or see this region's nucleotide sequence