Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02933 and H281DRAFT_02934 are separated by 31 nucleotides H281DRAFT_02934 and H281DRAFT_02935 are separated by 119 nucleotides H281DRAFT_02935 and H281DRAFT_02936 are separated by 380 nucleotides
H281DRAFT_02933: H281DRAFT_02933 - Tetratricopeptide repeat-containing protein, at 543,839 to 544,753
_02933
H281DRAFT_02934: H281DRAFT_02934 - hypothetical protein, at 544,785 to 545,087
_02934
H281DRAFT_02935: H281DRAFT_02935 - ATP-dependent transcriptional regulator, at 545,207 to 548,404
_02935
H281DRAFT_02936: H281DRAFT_02936 - nitrilase, at 548,785 to 549,723
_02936
Position (kb) 545
546
547
548
549 Strain fitness (log2 ratio) -2
-1
0
1 at 544.445 kb on - strand, within H281DRAFT_02933 at 544.459 kb on - strand, within H281DRAFT_02933 at 544.459 kb on - strand, within H281DRAFT_02933 at 544.577 kb on - strand, within H281DRAFT_02933 at 544.582 kb on + strand, within H281DRAFT_02933 at 544.582 kb on + strand, within H281DRAFT_02933 at 544.586 kb on + strand, within H281DRAFT_02933 at 544.587 kb on - strand, within H281DRAFT_02933 at 544.643 kb on + strand, within H281DRAFT_02933 at 544.669 kb on - strand at 544.746 kb on + strand at 544.746 kb on + strand at 544.939 kb on + strand at 544.941 kb on + strand, within H281DRAFT_02934 at 544.942 kb on - strand, within H281DRAFT_02934 at 544.942 kb on - strand, within H281DRAFT_02934 at 544.989 kb on + strand, within H281DRAFT_02934 at 545.057 kb on + strand at 545.058 kb on - strand at 545.058 kb on - strand at 545.471 kb on - strand at 545.471 kb on - strand at 545.600 kb on + strand, within H281DRAFT_02935 at 545.600 kb on + strand, within H281DRAFT_02935 at 545.601 kb on - strand, within H281DRAFT_02935 at 545.647 kb on + strand, within H281DRAFT_02935 at 545.720 kb on + strand, within H281DRAFT_02935 at 545.721 kb on - strand, within H281DRAFT_02935 at 546.015 kb on + strand, within H281DRAFT_02935 at 546.015 kb on + strand, within H281DRAFT_02935 at 546.015 kb on + strand, within H281DRAFT_02935 at 546.110 kb on - strand, within H281DRAFT_02935 at 546.110 kb on - strand, within H281DRAFT_02935 at 546.489 kb on + strand, within H281DRAFT_02935 at 546.490 kb on - strand, within H281DRAFT_02935 at 546.651 kb on + strand, within H281DRAFT_02935 at 547.311 kb on + strand, within H281DRAFT_02935 at 547.311 kb on + strand, within H281DRAFT_02935 at 547.311 kb on + strand, within H281DRAFT_02935 at 547.399 kb on - strand, within H281DRAFT_02935 at 547.417 kb on - strand, within H281DRAFT_02935 at 547.447 kb on - strand, within H281DRAFT_02935 at 547.452 kb on + strand, within H281DRAFT_02935 at 547.500 kb on + strand, within H281DRAFT_02935 at 547.645 kb on - strand, within H281DRAFT_02935 at 547.709 kb on - strand, within H281DRAFT_02935 at 548.213 kb on + strand at 548.214 kb on - strand at 548.241 kb on + strand at 548.241 kb on + strand at 548.411 kb on + strand at 548.412 kb on - strand at 548.487 kb on + strand at 548.846 kb on - strand at 548.862 kb on - strand at 548.930 kb on - strand, within H281DRAFT_02936 at 549.168 kb on - strand, within H281DRAFT_02936 at 549.205 kb on + strand, within H281DRAFT_02936 at 549.216 kb on - strand, within H281DRAFT_02936 at 549.216 kb on - strand, within H281DRAFT_02936
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 544,445 - H281DRAFT_02933 0.66 +0.7 544,459 - H281DRAFT_02933 0.68 -1.6 544,459 - H281DRAFT_02933 0.68 -0.0 544,577 - H281DRAFT_02933 0.81 -0.1 544,582 + H281DRAFT_02933 0.81 -0.2 544,582 + H281DRAFT_02933 0.81 +0.2 544,586 + H281DRAFT_02933 0.82 +0.7 544,587 - H281DRAFT_02933 0.82 -0.5 544,643 + H281DRAFT_02933 0.88 -0.1 544,669 - -0.1 544,746 + +0.6 544,746 + +0.0 544,939 + -0.2 544,941 + H281DRAFT_02934 0.51 -1.7 544,942 - H281DRAFT_02934 0.52 -2.1 544,942 - H281DRAFT_02934 0.52 +0.1 544,989 + H281DRAFT_02934 0.67 -0.5 545,057 + -0.1 545,058 - -0.2 545,058 - -2.0 545,471 - +1.2 545,471 - -0.6 545,600 + H281DRAFT_02935 0.12 -0.5 545,600 + H281DRAFT_02935 0.12 +0.9 545,601 - H281DRAFT_02935 0.12 -0.2 545,647 + H281DRAFT_02935 0.14 -0.2 545,720 + H281DRAFT_02935 0.16 +0.0 545,721 - H281DRAFT_02935 0.16 +0.5 546,015 + H281DRAFT_02935 0.25 +0.2 546,015 + H281DRAFT_02935 0.25 -0.7 546,015 + H281DRAFT_02935 0.25 +1.1 546,110 - H281DRAFT_02935 0.28 -0.2 546,110 - H281DRAFT_02935 0.28 -0.4 546,489 + H281DRAFT_02935 0.40 -1.1 546,490 - H281DRAFT_02935 0.40 -0.1 546,651 + H281DRAFT_02935 0.45 +0.3 547,311 + H281DRAFT_02935 0.66 +0.2 547,311 + H281DRAFT_02935 0.66 -0.4 547,311 + H281DRAFT_02935 0.66 -0.3 547,399 - H281DRAFT_02935 0.69 -0.3 547,417 - H281DRAFT_02935 0.69 -1.1 547,447 - H281DRAFT_02935 0.70 +0.0 547,452 + H281DRAFT_02935 0.70 -0.6 547,500 + H281DRAFT_02935 0.72 -0.4 547,645 - H281DRAFT_02935 0.76 +0.2 547,709 - H281DRAFT_02935 0.78 -0.5 548,213 + +0.4 548,214 - -0.5 548,241 + +1.0 548,241 + +0.1 548,411 + +0.3 548,412 - -0.7 548,487 + +1.1 548,846 - +0.1 548,862 - -0.6 548,930 - H281DRAFT_02936 0.15 +0.3 549,168 - H281DRAFT_02936 0.41 -0.8 549,205 + H281DRAFT_02936 0.45 -0.8 549,216 - H281DRAFT_02936 0.46 +0.5 549,216 - H281DRAFT_02936 0.46 -1.8
Or see this region's nucleotide sequence