Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02320

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02318 and H281DRAFT_02319 are separated by 114 nucleotidesH281DRAFT_02319 and H281DRAFT_02320 are separated by 368 nucleotidesH281DRAFT_02320 and H281DRAFT_02321 are separated by 169 nucleotides H281DRAFT_02318: H281DRAFT_02318 - protein translocase subunit yidC, at 472,932 to 474,590 _02318 H281DRAFT_02319: H281DRAFT_02319 - hypothetical protein, at 474,705 to 475,112 _02319 H281DRAFT_02320: H281DRAFT_02320 - tRNA modification GTPase trmE, at 475,481 to 476,875 _02320 H281DRAFT_02321: H281DRAFT_02321 - Site-specific recombinase XerD, at 477,045 to 478,256 _02321 Position (kb) 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 474.827 kb on - strand, within H281DRAFT_02319at 474.877 kb on + strand, within H281DRAFT_02319at 474.877 kb on + strand, within H281DRAFT_02319at 474.878 kb on - strand, within H281DRAFT_02319at 474.983 kb on + strand, within H281DRAFT_02319at 474.984 kb on - strand, within H281DRAFT_02319at 475.332 kb on + strandat 475.332 kb on + strandat 475.332 kb on + strandat 475.403 kb on + strandat 475.403 kb on + strandat 475.404 kb on - strandat 475.413 kb on + strandat 475.414 kb on - strandat 476.874 kb on - strandat 476.898 kb on - strandat 477.017 kb on + strandat 477.018 kb on - strandat 477.018 kb on - strandat 477.018 kb on - strandat 477.030 kb on - strandat 477.112 kb on - strandat 477.238 kb on + strand, within H281DRAFT_02321at 477.352 kb on + strand, within H281DRAFT_02321at 477.352 kb on + strand, within H281DRAFT_02321at 477.352 kb on + strand, within H281DRAFT_02321at 477.353 kb on - strand, within H281DRAFT_02321at 477.373 kb on + strand, within H281DRAFT_02321at 477.373 kb on + strand, within H281DRAFT_02321at 477.373 kb on + strand, within H281DRAFT_02321at 477.373 kb on + strand, within H281DRAFT_02321at 477.373 kb on + strand, within H281DRAFT_02321at 477.373 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.375 kb on + strand, within H281DRAFT_02321at 477.376 kb on - strand, within H281DRAFT_02321at 477.376 kb on - strand, within H281DRAFT_02321at 477.376 kb on - strand, within H281DRAFT_02321at 477.376 kb on - strand, within H281DRAFT_02321at 477.376 kb on - strand, within H281DRAFT_02321at 477.376 kb on - strand, within H281DRAFT_02321at 477.376 kb on - strand, within H281DRAFT_02321at 477.376 kb on - strand, within H281DRAFT_02321at 477.376 kb on - strand, within H281DRAFT_02321at 477.376 kb on - strand, within H281DRAFT_02321at 477.376 kb on - strand, within H281DRAFT_02321at 477.377 kb on + strand, within H281DRAFT_02321at 477.377 kb on + strand, within H281DRAFT_02321at 477.377 kb on + strand, within H281DRAFT_02321at 477.377 kb on + strand, within H281DRAFT_02321at 477.377 kb on + strand, within H281DRAFT_02321at 477.377 kb on + strand, within H281DRAFT_02321at 477.378 kb on - strand, within H281DRAFT_02321at 477.378 kb on - strand, within H281DRAFT_02321at 477.378 kb on - strand, within H281DRAFT_02321at 477.378 kb on - strand, within H281DRAFT_02321at 477.378 kb on - strand, within H281DRAFT_02321at 477.378 kb on - strand, within H281DRAFT_02321at 477.580 kb on - strand, within H281DRAFT_02321at 477.585 kb on + strand, within H281DRAFT_02321at 477.776 kb on - strand, within H281DRAFT_02321at 477.866 kb on + strand, within H281DRAFT_02321at 477.867 kb on - strand, within H281DRAFT_02321at 477.867 kb on - strand, within H281DRAFT_02321

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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474,827 - H281DRAFT_02319 0.30 +0.4
474,877 + H281DRAFT_02319 0.42 +0.6
474,877 + H281DRAFT_02319 0.42 -0.0
474,878 - H281DRAFT_02319 0.42 +0.3
474,983 + H281DRAFT_02319 0.68 +2.0
474,984 - H281DRAFT_02319 0.68 +0.2
475,332 + +0.8
475,332 + +0.3
475,332 + -1.0
475,403 + +0.6
475,403 + +0.4
475,404 - -1.3
475,413 + +1.4
475,414 - -0.9
476,874 - +1.3
476,898 - +0.2
477,017 + -2.0
477,018 - +0.8
477,018 - -0.1
477,018 - +1.7
477,030 - +0.5
477,112 - -0.3
477,238 + H281DRAFT_02321 0.16 +1.1
477,352 + H281DRAFT_02321 0.25 +0.2
477,352 + H281DRAFT_02321 0.25 +0.1
477,352 + H281DRAFT_02321 0.25 -0.5
477,353 - H281DRAFT_02321 0.25 -2.0
477,373 + H281DRAFT_02321 0.27 -0.2
477,373 + H281DRAFT_02321 0.27 -0.5
477,373 + H281DRAFT_02321 0.27 +0.4
477,373 + H281DRAFT_02321 0.27 +0.1
477,373 + H281DRAFT_02321 0.27 +0.2
477,373 + H281DRAFT_02321 0.27 -0.1
477,375 + H281DRAFT_02321 0.27 -0.4
477,375 + H281DRAFT_02321 0.27 -2.8
477,375 + H281DRAFT_02321 0.27 -0.3
477,375 + H281DRAFT_02321 0.27 +0.5
477,375 + H281DRAFT_02321 0.27 +0.0
477,375 + H281DRAFT_02321 0.27 +0.9
477,375 + H281DRAFT_02321 0.27 -0.6
477,375 + H281DRAFT_02321 0.27 +0.3
477,375 + H281DRAFT_02321 0.27 +0.4
477,375 + H281DRAFT_02321 0.27 -0.1
477,375 + H281DRAFT_02321 0.27 -1.2
477,375 + H281DRAFT_02321 0.27 -0.9
477,375 + H281DRAFT_02321 0.27 +0.5
477,375 + H281DRAFT_02321 0.27 -0.5
477,376 - H281DRAFT_02321 0.27 -0.2
477,376 - H281DRAFT_02321 0.27 +0.6
477,376 - H281DRAFT_02321 0.27 -1.6
477,376 - H281DRAFT_02321 0.27 +0.3
477,376 - H281DRAFT_02321 0.27 -0.9
477,376 - H281DRAFT_02321 0.27 -0.7
477,376 - H281DRAFT_02321 0.27 +0.5
477,376 - H281DRAFT_02321 0.27 -0.8
477,376 - H281DRAFT_02321 0.27 +1.2
477,376 - H281DRAFT_02321 0.27 -0.5
477,376 - H281DRAFT_02321 0.27 -1.0
477,377 + H281DRAFT_02321 0.27 -0.1
477,377 + H281DRAFT_02321 0.27 -2.4
477,377 + H281DRAFT_02321 0.27 +0.1
477,377 + H281DRAFT_02321 0.27 -0.3
477,377 + H281DRAFT_02321 0.27 +0.1
477,377 + H281DRAFT_02321 0.27 +0.9
477,378 - H281DRAFT_02321 0.27 +0.4
477,378 - H281DRAFT_02321 0.27 -1.3
477,378 - H281DRAFT_02321 0.27 +0.4
477,378 - H281DRAFT_02321 0.27 +0.5
477,378 - H281DRAFT_02321 0.27 +2.8
477,378 - H281DRAFT_02321 0.27 -0.1
477,580 - H281DRAFT_02321 0.44 -0.2
477,585 + H281DRAFT_02321 0.45 -1.0
477,776 - H281DRAFT_02321 0.60 -0.4
477,866 + H281DRAFT_02321 0.68 +0.2
477,867 - H281DRAFT_02321 0.68 +2.1
477,867 - H281DRAFT_02321 0.68 -1.4

Or see this region's nucleotide sequence