Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02273

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02272 and H281DRAFT_02273 are separated by 601 nucleotidesH281DRAFT_02273 and H281DRAFT_02274 are separated by 173 nucleotides H281DRAFT_02272: H281DRAFT_02272 - Antitoxin component YwqK of the YwqJK toxin-antitoxin module, at 417,163 to 418,218 _02272 H281DRAFT_02273: H281DRAFT_02273 - hypothetical protein, at 418,820 to 419,194 _02273 H281DRAFT_02274: H281DRAFT_02274 - Site-specific DNA recombinase, at 419,368 to 420,882 _02274 Position (kb) 418 419 420Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 417.893 kb on - strand, within H281DRAFT_02272at 417.901 kb on + strand, within H281DRAFT_02272at 417.901 kb on + strand, within H281DRAFT_02272at 417.961 kb on + strand, within H281DRAFT_02272at 417.962 kb on - strand, within H281DRAFT_02272at 417.973 kb on + strand, within H281DRAFT_02272at 417.974 kb on - strand, within H281DRAFT_02272at 417.993 kb on - strand, within H281DRAFT_02272at 418.031 kb on + strand, within H281DRAFT_02272at 418.031 kb on + strand, within H281DRAFT_02272at 418.032 kb on - strand, within H281DRAFT_02272at 418.032 kb on - strand, within H281DRAFT_02272at 418.061 kb on - strand, within H281DRAFT_02272at 418.093 kb on + strand, within H281DRAFT_02272at 418.094 kb on - strand, within H281DRAFT_02272at 418.213 kb on - strandat 418.277 kb on + strandat 418.475 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.572 kb on + strandat 418.573 kb on - strandat 418.573 kb on - strandat 418.573 kb on - strandat 418.573 kb on - strandat 418.573 kb on - strandat 418.573 kb on - strandat 418.573 kb on - strandat 418.645 kb on + strandat 418.646 kb on - strandat 418.646 kb on - strandat 418.648 kb on + strandat 418.807 kb on - strandat 418.859 kb on - strand, within H281DRAFT_02273at 418.859 kb on - strand, within H281DRAFT_02273at 418.985 kb on - strand, within H281DRAFT_02273at 418.992 kb on - strand, within H281DRAFT_02273at 418.992 kb on - strand, within H281DRAFT_02273at 419.036 kb on - strand, within H281DRAFT_02273at 419.213 kb on + strandat 419.214 kb on - strandat 419.214 kb on - strandat 419.215 kb on + strandat 419.215 kb on + strandat 419.216 kb on - strandat 419.230 kb on + strandat 419.230 kb on + strandat 419.231 kb on - strandat 419.360 kb on - strandat 419.367 kb on + strandat 419.367 kb on + strandat 419.367 kb on + strandat 419.367 kb on + strandat 419.367 kb on + strandat 419.368 kb on - strandat 419.389 kb on + strandat 419.459 kb on + strandat 419.461 kb on + strandat 419.461 kb on + strandat 419.461 kb on + strandat 419.462 kb on - strandat 419.551 kb on + strand, within H281DRAFT_02274at 419.551 kb on + strand, within H281DRAFT_02274at 419.552 kb on - strand, within H281DRAFT_02274at 419.577 kb on - strand, within H281DRAFT_02274at 419.660 kb on - strand, within H281DRAFT_02274at 419.660 kb on - strand, within H281DRAFT_02274at 419.709 kb on - strand, within H281DRAFT_02274at 419.725 kb on - strand, within H281DRAFT_02274at 419.789 kb on + strand, within H281DRAFT_02274at 419.789 kb on + strand, within H281DRAFT_02274at 419.790 kb on - strand, within H281DRAFT_02274at 419.790 kb on - strand, within H281DRAFT_02274at 419.790 kb on - strandat 419.790 kb on - strand, within H281DRAFT_02274at 419.866 kb on - strand, within H281DRAFT_02274at 419.954 kb on + strand, within H281DRAFT_02274at 419.964 kb on - strand, within H281DRAFT_02274at 419.965 kb on + strand, within H281DRAFT_02274at 419.965 kb on + strand, within H281DRAFT_02274at 419.966 kb on - strand, within H281DRAFT_02274at 419.966 kb on - strand, within H281DRAFT_02274at 419.966 kb on - strand, within H281DRAFT_02274at 419.966 kb on - strand, within H281DRAFT_02274at 420.083 kb on + strand, within H281DRAFT_02274at 420.084 kb on - strand, within H281DRAFT_02274at 420.084 kb on - strand, within H281DRAFT_02274at 420.097 kb on + strand, within H281DRAFT_02274at 420.097 kb on + strandat 420.097 kb on + strand, within H281DRAFT_02274at 420.097 kb on + strand, within H281DRAFT_02274at 420.097 kb on + strand, within H281DRAFT_02274at 420.097 kb on + strand, within H281DRAFT_02274at 420.098 kb on - strand, within H281DRAFT_02274at 420.098 kb on - strand, within H281DRAFT_02274

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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417,893 - H281DRAFT_02272 0.69 -1.1
417,901 + H281DRAFT_02272 0.70 +1.0
417,901 + H281DRAFT_02272 0.70 -0.0
417,961 + H281DRAFT_02272 0.76 -0.6
417,962 - H281DRAFT_02272 0.76 +0.8
417,973 + H281DRAFT_02272 0.77 +0.5
417,974 - H281DRAFT_02272 0.77 -0.8
417,993 - H281DRAFT_02272 0.79 -0.4
418,031 + H281DRAFT_02272 0.82 +0.9
418,031 + H281DRAFT_02272 0.82 -0.4
418,032 - H281DRAFT_02272 0.82 +1.0
418,032 - H281DRAFT_02272 0.82 -0.0
418,061 - H281DRAFT_02272 0.85 +1.0
418,093 + H281DRAFT_02272 0.88 -0.6
418,094 - H281DRAFT_02272 0.88 +0.5
418,213 - +1.4
418,277 + +0.8
418,475 + +0.8
418,572 + +0.7
418,572 + +0.8
418,572 + +0.3
418,572 + -1.1
418,572 + +0.0
418,572 + -0.3
418,572 + +4.6
418,572 + +1.3
418,572 + +0.3
418,572 + -1.0
418,572 + +0.8
418,572 + -0.2
418,572 + -0.1
418,572 + +0.3
418,572 + -0.2
418,572 + -0.8
418,572 + -0.6
418,573 - +0.3
418,573 - +0.1
418,573 - -1.7
418,573 - -0.2
418,573 - +2.5
418,573 - +0.6
418,573 - -0.6
418,645 + -0.9
418,646 - -1.4
418,646 - -0.4
418,648 + -2.1
418,807 - +0.3
418,859 - H281DRAFT_02273 0.10 +0.9
418,859 - H281DRAFT_02273 0.10 -0.4
418,985 - H281DRAFT_02273 0.44 -0.6
418,992 - H281DRAFT_02273 0.46 +0.7
418,992 - H281DRAFT_02273 0.46 -0.5
419,036 - H281DRAFT_02273 0.58 -0.7
419,213 + -0.2
419,214 - +0.6
419,214 - +0.1
419,215 + -0.1
419,215 + +0.3
419,216 - +0.7
419,230 + -1.8
419,230 + -0.1
419,231 - -1.3
419,360 - -1.5
419,367 + +0.2
419,367 + -0.6
419,367 + +0.3
419,367 + -0.3
419,367 + +0.9
419,368 - -1.0
419,389 + -0.4
419,459 + -1.4
419,461 + -1.6
419,461 + +0.7
419,461 + +3.6
419,462 - +0.7
419,551 + H281DRAFT_02274 0.12 +0.7
419,551 + H281DRAFT_02274 0.12 -0.3
419,552 - H281DRAFT_02274 0.12 +0.9
419,577 - H281DRAFT_02274 0.14 +1.5
419,660 - H281DRAFT_02274 0.19 -0.0
419,660 - H281DRAFT_02274 0.19 -0.5
419,709 - H281DRAFT_02274 0.23 +0.2
419,725 - H281DRAFT_02274 0.24 +1.4
419,789 + H281DRAFT_02274 0.28 +1.1
419,789 + H281DRAFT_02274 0.28 +1.1
419,790 - H281DRAFT_02274 0.28 -0.3
419,790 - H281DRAFT_02274 0.28 +0.0
419,790 - -0.8
419,790 - H281DRAFT_02274 0.28 +0.2
419,866 - H281DRAFT_02274 0.33 +0.1
419,954 + H281DRAFT_02274 0.39 -0.4
419,964 - H281DRAFT_02274 0.39 -0.9
419,965 + H281DRAFT_02274 0.39 +2.4
419,965 + H281DRAFT_02274 0.39 +0.4
419,966 - H281DRAFT_02274 0.39 +0.3
419,966 - H281DRAFT_02274 0.39 +0.2
419,966 - H281DRAFT_02274 0.39 -0.1
419,966 - H281DRAFT_02274 0.39 +1.1
420,083 + H281DRAFT_02274 0.47 +0.5
420,084 - H281DRAFT_02274 0.47 +0.4
420,084 - H281DRAFT_02274 0.47 -0.1
420,097 + H281DRAFT_02274 0.48 +1.2
420,097 + +5.2
420,097 + H281DRAFT_02274 0.48 -0.0
420,097 + H281DRAFT_02274 0.48 +0.1
420,097 + H281DRAFT_02274 0.48 -0.9
420,097 + H281DRAFT_02274 0.48 +0.4
420,098 - H281DRAFT_02274 0.48 -0.3
420,098 - H281DRAFT_02274 0.48 -1.6

Or see this region's nucleotide sequence