Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01942 and H281DRAFT_01943 are separated by 66 nucleotides H281DRAFT_01943 and H281DRAFT_01944 are separated by 663 nucleotides
H281DRAFT_01942: H281DRAFT_01942 - histidinol-phosphate aminotransferase, at 58,090 to 59,169
_01942
H281DRAFT_01943: H281DRAFT_01943 - Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I), at 59,236 to 59,493
_01943
H281DRAFT_01944: H281DRAFT_01944 - Rad3-related DNA helicase, at 60,157 to 62,745
_01944
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 59.158 kb on + strand at 59.158 kb on + strand at 59.158 kb on + strand at 59.159 kb on - strand at 59.159 kb on - strand at 59.159 kb on - strand at 59.159 kb on - strand at 59.267 kb on + strand, within H281DRAFT_01943 at 59.268 kb on - strand, within H281DRAFT_01943 at 59.524 kb on - strand at 59.526 kb on - strand at 59.526 kb on - strand at 59.526 kb on - strand at 59.671 kb on + strand at 59.671 kb on + strand at 59.671 kb on + strand at 59.672 kb on - strand at 59.672 kb on - strand at 59.687 kb on + strand at 59.687 kb on + strand at 59.687 kb on + strand at 59.687 kb on + strand at 59.688 kb on - strand at 59.688 kb on - strand at 59.688 kb on - strand at 59.737 kb on + strand at 59.737 kb on + strand at 59.737 kb on + strand at 59.775 kb on - strand at 59.969 kb on + strand at 59.969 kb on + strand at 59.993 kb on + strand at 59.993 kb on + strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 60.014 kb on - strand at 60.052 kb on + strand at 60.052 kb on + strand at 60.052 kb on + strand at 60.053 kb on - strand at 60.053 kb on - strand at 60.117 kb on - strand at 60.117 kb on - strand at 60.136 kb on + strand at 60.137 kb on - strand at 60.401 kb on + strand at 60.401 kb on + strand at 60.401 kb on + strand at 60.401 kb on + strand at 60.402 kb on - strand at 60.402 kb on - strand at 60.403 kb on + strand at 60.403 kb on + strand at 60.404 kb on - strand at 60.404 kb on - strand at 60.461 kb on - strand, within H281DRAFT_01944 at 60.461 kb on - strand, within H281DRAFT_01944 at 60.502 kb on + strand, within H281DRAFT_01944 at 60.503 kb on - strand, within H281DRAFT_01944 at 60.503 kb on - strand, within H281DRAFT_01944 at 60.503 kb on - strand, within H281DRAFT_01944 at 60.574 kb on - strand, within H281DRAFT_01944 at 60.574 kb on - strand, within H281DRAFT_01944 at 60.577 kb on - strand, within H281DRAFT_01944 at 60.608 kb on + strand, within H281DRAFT_01944 at 60.608 kb on + strand, within H281DRAFT_01944 at 60.640 kb on + strand, within H281DRAFT_01944 at 60.666 kb on + strand, within H281DRAFT_01944 at 60.730 kb on + strand, within H281DRAFT_01944 at 60.730 kb on + strand, within H281DRAFT_01944 at 60.730 kb on + strand, within H281DRAFT_01944 at 60.734 kb on + strand, within H281DRAFT_01944 at 60.735 kb on - strand, within H281DRAFT_01944 at 60.735 kb on - strand, within H281DRAFT_01944 at 60.873 kb on + strand, within H281DRAFT_01944 at 60.873 kb on + strand, within H281DRAFT_01944 at 60.874 kb on - strand, within H281DRAFT_01944 at 60.874 kb on - strand, within H281DRAFT_01944 at 60.886 kb on + strand, within H281DRAFT_01944 at 60.931 kb on + strand, within H281DRAFT_01944 at 60.931 kb on + strand, within H281DRAFT_01944 at 60.931 kb on + strand, within H281DRAFT_01944 at 60.931 kb on + strand, within H281DRAFT_01944 at 60.932 kb on - strand, within H281DRAFT_01944 at 60.932 kb on - strand, within H281DRAFT_01944 at 60.932 kb on - strand, within H281DRAFT_01944 at 60.932 kb on - strand, within H281DRAFT_01944 at 60.932 kb on - strand, within H281DRAFT_01944 at 61.018 kb on + strand, within H281DRAFT_01944 at 61.018 kb on + strand, within H281DRAFT_01944 at 61.018 kb on + strand, within H281DRAFT_01944 at 61.018 kb on + strand, within H281DRAFT_01944 at 61.018 kb on + strand, within H281DRAFT_01944 at 61.018 kb on + strand, within H281DRAFT_01944 at 61.018 kb on + strand, within H281DRAFT_01944 at 61.018 kb on + strand, within H281DRAFT_01944 at 61.018 kb on + strand, within H281DRAFT_01944 at 61.019 kb on - strand, within H281DRAFT_01944 at 61.019 kb on - strand, within H281DRAFT_01944 at 61.019 kb on - strand, within H281DRAFT_01944 at 61.019 kb on - strand, within H281DRAFT_01944 at 61.019 kb on - strand, within H281DRAFT_01944 at 61.283 kb on - strand, within H281DRAFT_01944 at 61.349 kb on + strand, within H281DRAFT_01944 at 61.349 kb on + strand, within H281DRAFT_01944 at 61.350 kb on - strand, within H281DRAFT_01944 at 61.370 kb on - strand at 61.479 kb on + strand, within H281DRAFT_01944 at 61.479 kb on + strand, within H281DRAFT_01944 at 61.479 kb on + strand, within H281DRAFT_01944 at 61.480 kb on - strand, within H281DRAFT_01944 at 61.486 kb on + strand, within H281DRAFT_01944 at 61.486 kb on + strand, within H281DRAFT_01944 at 61.486 kb on + strand, within H281DRAFT_01944 at 61.487 kb on - strand, within H281DRAFT_01944 at 61.487 kb on - strand, within H281DRAFT_01944 at 61.487 kb on - strand, within H281DRAFT_01944 at 61.591 kb on + strand, within H281DRAFT_01944 at 61.591 kb on + strand, within H281DRAFT_01944 at 61.591 kb on + strand, within H281DRAFT_01944 at 61.592 kb on - strand, within H281DRAFT_01944 at 61.668 kb on + strand, within H281DRAFT_01944 at 61.668 kb on + strand, within H281DRAFT_01944 at 61.864 kb on + strand, within H281DRAFT_01944 at 61.865 kb on - strand, within H281DRAFT_01944 at 61.865 kb on - strand, within H281DRAFT_01944 at 61.865 kb on - strand, within H281DRAFT_01944 at 61.948 kb on + strand, within H281DRAFT_01944 at 61.969 kb on + strand, within H281DRAFT_01944 at 61.969 kb on + strand, within H281DRAFT_01944 at 61.970 kb on - strand, within H281DRAFT_01944 at 61.970 kb on - strand, within H281DRAFT_01944 at 62.021 kb on - strand, within H281DRAFT_01944 at 62.021 kb on - strand, within H281DRAFT_01944 at 62.035 kb on + strand, within H281DRAFT_01944 at 62.035 kb on + strand, within H281DRAFT_01944 at 62.035 kb on + strand, within H281DRAFT_01944 at 62.035 kb on + strand, within H281DRAFT_01944 at 62.036 kb on - strand, within H281DRAFT_01944 at 62.036 kb on - strand, within H281DRAFT_01944 at 62.138 kb on + strand, within H281DRAFT_01944 at 62.139 kb on - strand, within H281DRAFT_01944 at 62.159 kb on + strand, within H281DRAFT_01944 at 62.175 kb on + strand, within H281DRAFT_01944 at 62.176 kb on - strand, within H281DRAFT_01944 at 62.176 kb on - strand, within H281DRAFT_01944 at 62.362 kb on + strand, within H281DRAFT_01944 at 62.362 kb on + strand, within H281DRAFT_01944 at 62.362 kb on + strand, within H281DRAFT_01944 at 62.362 kb on + strand, within H281DRAFT_01944 at 62.362 kb on + strand, within H281DRAFT_01944 at 62.363 kb on - strand, within H281DRAFT_01944 at 62.470 kb on + strand, within H281DRAFT_01944 at 62.470 kb on + strand, within H281DRAFT_01944 at 62.471 kb on - strand, within H281DRAFT_01944 at 62.480 kb on + strand, within H281DRAFT_01944 at 62.481 kb on - strand, within H281DRAFT_01944 at 62.481 kb on - strand, within H281DRAFT_01944 at 62.481 kb on - strand, within H281DRAFT_01944 at 62.486 kb on + strand, within H281DRAFT_01944 at 62.542 kb on + strand at 62.542 kb on + strand at 62.603 kb on + strand at 62.702 kb on - strand at 62.751 kb on - strand at 62.751 kb on - strand at 62.754 kb on - strand at 62.813 kb on + strand at 62.814 kb on - strand at 62.845 kb on - strand at 62.845 kb on - strand at 62.861 kb on + strand at 62.861 kb on + strand at 62.862 kb on - strand at 62.862 kb on - strand at 62.862 kb on - strand at 62.862 kb on - strand at 62.862 kb on - strand at 62.862 kb on - strand at 62.945 kb on + strand at 62.945 kb on + strand at 62.945 kb on + strand at 62.946 kb on - strand at 62.980 kb on - strand at 63.030 kb on + strand at 63.030 kb on + strand at 63.030 kb on + strand at 63.031 kb on - strand at 63.031 kb on - strand at 63.136 kb on + strand at 63.220 kb on - strand at 63.220 kb on - strand at 63.220 kb on - strand at 63.220 kb on - strand at 63.368 kb on + strand at 63.406 kb on + strand at 63.406 kb on + strand at 63.406 kb on + strand at 63.407 kb on - strand at 63.407 kb on - strand at 63.407 kb on - strand at 63.429 kb on + strand at 63.430 kb on - strand at 63.430 kb on - strand at 63.430 kb on - strand at 63.430 kb on - strand at 63.483 kb on - strand at 63.483 kb on - strand at 63.591 kb on + strand at 63.592 kb on - strand at 63.592 kb on - strand at 63.597 kb on - strand at 63.597 kb on - strand at 63.650 kb on + strand at 63.697 kb on - strand at 63.697 kb on - strand at 63.697 kb on - strand at 63.740 kb on + strand at 63.741 kb on - strand at 63.741 kb on - strand at 63.741 kb on - strand at 63.744 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 59,158 + -0.1 59,158 + +0.7 59,158 + +1.5 59,159 - -1.7 59,159 - +1.3 59,159 - +1.1 59,159 - -1.2 59,267 + H281DRAFT_01943 0.12 -0.1 59,268 - H281DRAFT_01943 0.12 +1.3 59,524 - -0.0 59,526 - -0.6 59,526 - +1.3 59,526 - -3.2 59,671 + +2.3 59,671 + -0.8 59,671 + +0.2 59,672 - -0.2 59,672 - +1.2 59,687 + -1.3 59,687 + -0.9 59,687 + -0.1 59,687 + +1.1 59,688 - -2.8 59,688 - -1.2 59,688 - -0.8 59,737 + +0.3 59,737 + -1.2 59,737 + +1.0 59,775 - +1.0 59,969 + -0.7 59,969 + +0.6 59,993 + -0.3 59,993 + +1.4 59,994 - -0.3 59,994 - +0.3 59,994 - +0.9 59,994 - -1.2 59,994 - -0.1 59,994 - +0.9 59,994 - +1.0 59,994 - +0.2 59,994 - +0.6 59,994 - -0.2 60,014 - +0.7 60,052 + +0.3 60,052 + -0.4 60,052 + +0.1 60,053 - +0.1 60,053 - +0.9 60,117 - +0.4 60,117 - +0.7 60,136 + +0.3 60,137 - +0.1 60,401 + -3.1 60,401 + -0.4 60,401 + -1.9 60,401 + +0.3 60,402 - -0.0 60,402 - -0.5 60,403 + -1.7 60,403 + +0.7 60,404 - +0.0 60,404 - +0.7 60,461 - H281DRAFT_01944 0.12 +0.9 60,461 - H281DRAFT_01944 0.12 +0.1 60,502 + H281DRAFT_01944 0.13 +0.3 60,503 - H281DRAFT_01944 0.13 -0.3 60,503 - H281DRAFT_01944 0.13 +1.0 60,503 - H281DRAFT_01944 0.13 +0.7 60,574 - H281DRAFT_01944 0.16 +0.7 60,574 - H281DRAFT_01944 0.16 -0.3 60,577 - H281DRAFT_01944 0.16 +0.4 60,608 + H281DRAFT_01944 0.17 -0.6 60,608 + H281DRAFT_01944 0.17 +0.5 60,640 + H281DRAFT_01944 0.19 -0.0 60,666 + H281DRAFT_01944 0.20 +0.2 60,730 + H281DRAFT_01944 0.22 +0.6 60,730 + H281DRAFT_01944 0.22 -0.4 60,730 + H281DRAFT_01944 0.22 -0.6 60,734 + H281DRAFT_01944 0.22 +0.0 60,735 - H281DRAFT_01944 0.22 -0.2 60,735 - H281DRAFT_01944 0.22 +0.9 60,873 + H281DRAFT_01944 0.28 +2.0 60,873 + H281DRAFT_01944 0.28 +0.7 60,874 - H281DRAFT_01944 0.28 +1.1 60,874 - H281DRAFT_01944 0.28 +0.2 60,886 + H281DRAFT_01944 0.28 +0.7 60,931 + H281DRAFT_01944 0.30 -0.4 60,931 + H281DRAFT_01944 0.30 -0.2 60,931 + H281DRAFT_01944 0.30 -0.5 60,931 + H281DRAFT_01944 0.30 -0.8 60,932 - H281DRAFT_01944 0.30 +0.9 60,932 - H281DRAFT_01944 0.30 -0.8 60,932 - H281DRAFT_01944 0.30 -0.1 60,932 - H281DRAFT_01944 0.30 +1.9 60,932 - H281DRAFT_01944 0.30 +1.1 61,018 + H281DRAFT_01944 0.33 -0.4 61,018 + H281DRAFT_01944 0.33 -0.5 61,018 + H281DRAFT_01944 0.33 +0.6 61,018 + H281DRAFT_01944 0.33 +0.2 61,018 + H281DRAFT_01944 0.33 +0.4 61,018 + H281DRAFT_01944 0.33 +0.5 61,018 + H281DRAFT_01944 0.33 +0.0 61,018 + H281DRAFT_01944 0.33 +2.6 61,018 + H281DRAFT_01944 0.33 -0.8 61,019 - H281DRAFT_01944 0.33 +0.8 61,019 - H281DRAFT_01944 0.33 +0.1 61,019 - H281DRAFT_01944 0.33 +0.7 61,019 - H281DRAFT_01944 0.33 +1.0 61,019 - H281DRAFT_01944 0.33 -0.4 61,283 - H281DRAFT_01944 0.43 -1.4 61,349 + H281DRAFT_01944 0.46 +0.5 61,349 + H281DRAFT_01944 0.46 -1.9 61,350 - H281DRAFT_01944 0.46 -0.5 61,370 - -1.2 61,479 + H281DRAFT_01944 0.51 +0.1 61,479 + H281DRAFT_01944 0.51 -0.2 61,479 + H281DRAFT_01944 0.51 -0.2 61,480 - H281DRAFT_01944 0.51 +0.9 61,486 + H281DRAFT_01944 0.51 +0.2 61,486 + H281DRAFT_01944 0.51 +0.4 61,486 + H281DRAFT_01944 0.51 -0.4 61,487 - H281DRAFT_01944 0.51 -0.0 61,487 - H281DRAFT_01944 0.51 +0.6 61,487 - H281DRAFT_01944 0.51 -3.1 61,591 + H281DRAFT_01944 0.55 -1.6 61,591 + H281DRAFT_01944 0.55 +0.6 61,591 + H281DRAFT_01944 0.55 +0.2 61,592 - H281DRAFT_01944 0.55 -0.1 61,668 + H281DRAFT_01944 0.58 +0.4 61,668 + H281DRAFT_01944 0.58 -0.1 61,864 + H281DRAFT_01944 0.66 -0.2 61,865 - H281DRAFT_01944 0.66 +0.2 61,865 - H281DRAFT_01944 0.66 -0.7 61,865 - H281DRAFT_01944 0.66 -0.4 61,948 + H281DRAFT_01944 0.69 -1.1 61,969 + H281DRAFT_01944 0.70 +0.2 61,969 + H281DRAFT_01944 0.70 -0.4 61,970 - H281DRAFT_01944 0.70 +0.6 61,970 - H281DRAFT_01944 0.70 +2.0 62,021 - H281DRAFT_01944 0.72 +0.8 62,021 - H281DRAFT_01944 0.72 +0.6 62,035 + H281DRAFT_01944 0.73 +0.2 62,035 + H281DRAFT_01944 0.73 -0.1 62,035 + H281DRAFT_01944 0.73 -0.1 62,035 + H281DRAFT_01944 0.73 +0.3 62,036 - H281DRAFT_01944 0.73 -0.1 62,036 - H281DRAFT_01944 0.73 +0.7 62,138 + H281DRAFT_01944 0.77 -0.4 62,139 - H281DRAFT_01944 0.77 -0.4 62,159 + H281DRAFT_01944 0.77 +0.5 62,175 + H281DRAFT_01944 0.78 +0.4 62,176 - H281DRAFT_01944 0.78 +0.2 62,176 - H281DRAFT_01944 0.78 +0.9 62,362 + H281DRAFT_01944 0.85 +0.2 62,362 + H281DRAFT_01944 0.85 -1.2 62,362 + H281DRAFT_01944 0.85 +0.9 62,362 + H281DRAFT_01944 0.85 +0.5 62,362 + H281DRAFT_01944 0.85 -0.2 62,363 - H281DRAFT_01944 0.85 +0.5 62,470 + H281DRAFT_01944 0.89 -1.5 62,470 + H281DRAFT_01944 0.89 -1.2 62,471 - H281DRAFT_01944 0.89 -1.1 62,480 + H281DRAFT_01944 0.90 +2.0 62,481 - H281DRAFT_01944 0.90 +0.2 62,481 - H281DRAFT_01944 0.90 -0.6 62,481 - H281DRAFT_01944 0.90 +0.3 62,486 + H281DRAFT_01944 0.90 -1.7 62,542 + +0.6 62,542 + -0.4 62,603 + -0.1 62,702 - +0.7 62,751 - -1.0 62,751 - -0.2 62,754 - +0.7 62,813 + +0.2 62,814 - -1.7 62,845 - -1.4 62,845 - -0.4 62,861 + +0.6 62,861 + -0.5 62,862 - +1.0 62,862 - +0.4 62,862 - -2.1 62,862 - +0.5 62,862 - +0.2 62,862 - +0.1 62,945 + -0.3 62,945 + +0.0 62,945 + -0.4 62,946 - -0.1 62,980 - +0.3 63,030 + -0.7 63,030 + +0.5 63,030 + +1.0 63,031 - +1.0 63,031 - +0.3 63,136 + -0.1 63,220 - +0.1 63,220 - +1.4 63,220 - +0.6 63,220 - +0.2 63,368 + -0.8 63,406 + +0.5 63,406 + -0.2 63,406 + -1.4 63,407 - -2.3 63,407 - +0.1 63,407 - -0.7 63,429 + +0.3 63,430 - +0.8 63,430 - -0.2 63,430 - +0.4 63,430 - -0.1 63,483 - -0.8 63,483 - -1.2 63,591 + +0.7 63,592 - -0.2 63,592 - -0.0 63,597 - +0.6 63,597 - +0.1 63,650 + -0.7 63,697 - -0.3 63,697 - +0.6 63,697 - -0.4 63,740 + -0.8 63,741 - -1.4 63,741 - +0.1 63,741 - -1.1 63,744 + -0.7
Or see this region's nucleotide sequence