Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01821 and H281DRAFT_01822 are separated by 86 nucleotides H281DRAFT_01822 and H281DRAFT_01823 are separated by 146 nucleotides H281DRAFT_01823 and H281DRAFT_01824 are separated by 185 nucleotides
H281DRAFT_01821: H281DRAFT_01821 - Predicted lipid-binding transport protein, Tim44 family, at 726,314 to 727,282
_01821
H281DRAFT_01822: H281DRAFT_01822 - IMP dehydrogenase, at 727,369 to 727,851
_01822
H281DRAFT_01823: H281DRAFT_01823 - transcriptional regulator, LysR family, at 727,998 to 728,894
_01823
H281DRAFT_01824: H281DRAFT_01824 - methyl-accepting chemotaxis sensory transducer with Cache sensor, at 729,080 to 730,639
_01824
Position (kb) 727
728
729 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 727.278 kb on + strand at 727.279 kb on - strand at 727.279 kb on - strand at 727.279 kb on - strand at 727.279 kb on - strand at 727.282 kb on + strand at 727.282 kb on + strand at 727.283 kb on - strand at 727.283 kb on - strand at 727.283 kb on - strand at 727.434 kb on - strand, within H281DRAFT_01822 at 727.542 kb on - strand, within H281DRAFT_01822 at 727.542 kb on - strand, within H281DRAFT_01822 at 727.642 kb on - strand, within H281DRAFT_01822 at 727.663 kb on + strand, within H281DRAFT_01822 at 727.663 kb on + strand, within H281DRAFT_01822 at 727.664 kb on - strand, within H281DRAFT_01822 at 727.682 kb on + strand, within H281DRAFT_01822 at 727.775 kb on + strand, within H281DRAFT_01822 at 727.851 kb on + strand at 727.851 kb on + strand at 727.852 kb on - strand at 727.852 kb on - strand at 727.852 kb on - strand at 727.852 kb on - strand at 727.852 kb on - strand at 727.871 kb on + strand at 728.016 kb on + strand at 728.019 kb on + strand at 728.020 kb on - strand at 728.020 kb on - strand at 728.167 kb on + strand, within H281DRAFT_01823 at 728.167 kb on + strand, within H281DRAFT_01823 at 728.196 kb on + strand, within H281DRAFT_01823 at 728.197 kb on - strand, within H281DRAFT_01823 at 728.477 kb on + strand, within H281DRAFT_01823 at 728.478 kb on - strand, within H281DRAFT_01823 at 728.834 kb on + strand at 728.893 kb on - strand at 729.019 kb on + strand at 729.020 kb on - strand at 729.020 kb on - strand at 729.020 kb on - strand at 729.044 kb on + strand at 729.044 kb on + strand at 729.045 kb on - strand at 729.108 kb on + strand at 729.109 kb on - strand at 729.109 kb on - strand at 729.156 kb on + strand at 729.178 kb on + strand at 729.179 kb on - strand at 729.347 kb on + strand, within H281DRAFT_01824 at 729.348 kb on - strand, within H281DRAFT_01824 at 729.455 kb on + strand, within H281DRAFT_01824 at 729.500 kb on + strand, within H281DRAFT_01824 at 729.500 kb on + strand, within H281DRAFT_01824 at 729.501 kb on - strand, within H281DRAFT_01824 at 729.501 kb on - strand, within H281DRAFT_01824 at 729.510 kb on - strand, within H281DRAFT_01824 at 729.605 kb on + strand, within H281DRAFT_01824 at 729.605 kb on + strand, within H281DRAFT_01824 at 729.605 kb on + strand, within H281DRAFT_01824 at 729.606 kb on - strand, within H281DRAFT_01824 at 729.633 kb on - strand, within H281DRAFT_01824 at 729.633 kb on - strand, within H281DRAFT_01824 at 729.678 kb on + strand, within H281DRAFT_01824 at 729.679 kb on - strand, within H281DRAFT_01824 at 729.797 kb on - strand, within H281DRAFT_01824
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 727,278 + -0.5 727,279 - -0.6 727,279 - +0.3 727,279 - -2.0 727,279 - +2.3 727,282 + +0.2 727,282 + -0.2 727,283 - +0.2 727,283 - -0.6 727,283 - +0.2 727,434 - H281DRAFT_01822 0.13 +0.4 727,542 - H281DRAFT_01822 0.36 +0.4 727,542 - H281DRAFT_01822 0.36 -0.3 727,642 - H281DRAFT_01822 0.57 -0.1 727,663 + H281DRAFT_01822 0.61 -0.3 727,663 + H281DRAFT_01822 0.61 +0.3 727,664 - H281DRAFT_01822 0.61 -0.6 727,682 + H281DRAFT_01822 0.65 -1.8 727,775 + H281DRAFT_01822 0.84 +0.2 727,851 + +0.2 727,851 + +0.1 727,852 - -0.3 727,852 - +0.7 727,852 - +0.9 727,852 - +0.1 727,852 - -0.4 727,871 + -1.8 728,016 + +0.2 728,019 + +0.6 728,020 - -0.0 728,020 - -0.3 728,167 + H281DRAFT_01823 0.19 +1.1 728,167 + H281DRAFT_01823 0.19 -1.0 728,196 + H281DRAFT_01823 0.22 -1.1 728,197 - H281DRAFT_01823 0.22 -0.3 728,477 + H281DRAFT_01823 0.53 -0.5 728,478 - H281DRAFT_01823 0.54 +0.2 728,834 + -0.1 728,893 - +0.7 729,019 + -0.3 729,020 - -0.3 729,020 - -0.9 729,020 - +0.0 729,044 + -0.0 729,044 + -2.1 729,045 - +0.2 729,108 + -1.4 729,109 - -1.5 729,109 - -0.5 729,156 + -0.6 729,178 + -0.5 729,179 - -0.2 729,347 + H281DRAFT_01824 0.17 -0.2 729,348 - H281DRAFT_01824 0.17 +0.4 729,455 + H281DRAFT_01824 0.24 +0.6 729,500 + H281DRAFT_01824 0.27 +0.5 729,500 + H281DRAFT_01824 0.27 +2.9 729,501 - H281DRAFT_01824 0.27 +0.7 729,501 - H281DRAFT_01824 0.27 -0.3 729,510 - H281DRAFT_01824 0.28 +0.2 729,605 + H281DRAFT_01824 0.34 -0.7 729,605 + H281DRAFT_01824 0.34 +0.0 729,605 + H281DRAFT_01824 0.34 +0.4 729,606 - H281DRAFT_01824 0.34 +0.5 729,633 - H281DRAFT_01824 0.35 +0.9 729,633 - H281DRAFT_01824 0.35 -0.6 729,678 + H281DRAFT_01824 0.38 -0.7 729,679 - H281DRAFT_01824 0.38 +0.1 729,797 - H281DRAFT_01824 0.46 +0.5
Or see this region's nucleotide sequence