Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01668 and H281DRAFT_01669 are separated by 308 nucleotides H281DRAFT_01669 and H281DRAFT_01670 overlap by 4 nucleotides H281DRAFT_01670 and H281DRAFT_01671 are separated by 22 nucleotides
H281DRAFT_01668: H281DRAFT_01668 - gamma-aminobutyrate:proton symporter, AAT family, at 547,843 to 549,222
_01668
H281DRAFT_01669: H281DRAFT_01669 - NAD(P)H dehydrogenase (quinone), at 549,531 to 550,238
_01669
H281DRAFT_01670: H281DRAFT_01670 - Enoyl-CoA hydratase/carnithine racemase, at 550,235 to 550,987
_01670
H281DRAFT_01671: H281DRAFT_01671 - indolepyruvate ferredoxin oxidoreductase, at 551,010 to 554,564
_01671
Position (kb) 549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 548.645 kb on - strand, within H281DRAFT_01668 at 549.463 kb on - strand at 549.613 kb on + strand, within H281DRAFT_01669 at 549.614 kb on - strand, within H281DRAFT_01669 at 549.614 kb on - strand, within H281DRAFT_01669 at 549.614 kb on - strand, within H281DRAFT_01669 at 549.614 kb on - strand, within H281DRAFT_01669 at 549.614 kb on - strand, within H281DRAFT_01669 at 549.785 kb on + strand, within H281DRAFT_01669 at 549.959 kb on + strand, within H281DRAFT_01669 at 550.045 kb on + strand, within H281DRAFT_01669 at 550.118 kb on - strand at 550.420 kb on - strand, within H281DRAFT_01670 at 550.420 kb on - strand, within H281DRAFT_01670 at 550.588 kb on + strand, within H281DRAFT_01670 at 550.743 kb on - strand, within H281DRAFT_01670 at 550.832 kb on + strand, within H281DRAFT_01670 at 550.833 kb on - strand, within H281DRAFT_01670
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 548,645 - H281DRAFT_01668 0.58 -0.8 549,463 - +0.5 549,613 + H281DRAFT_01669 0.12 +0.4 549,614 - H281DRAFT_01669 0.12 +0.9 549,614 - H281DRAFT_01669 0.12 -0.2 549,614 - H281DRAFT_01669 0.12 -2.4 549,614 - H281DRAFT_01669 0.12 +0.2 549,614 - H281DRAFT_01669 0.12 -0.0 549,785 + H281DRAFT_01669 0.36 +0.1 549,959 + H281DRAFT_01669 0.60 -3.3 550,045 + H281DRAFT_01669 0.73 -1.8 550,118 - -1.9 550,420 - H281DRAFT_01670 0.25 -0.5 550,420 - H281DRAFT_01670 0.25 +0.4 550,588 + H281DRAFT_01670 0.47 -0.4 550,743 - H281DRAFT_01670 0.67 +0.9 550,832 + H281DRAFT_01670 0.79 -0.2 550,833 - H281DRAFT_01670 0.79 -0.3
Or see this region's nucleotide sequence