Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01628

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01626 and H281DRAFT_01627 overlap by 1 nucleotidesH281DRAFT_01627 and H281DRAFT_01628 overlap by 4 nucleotidesH281DRAFT_01628 and H281DRAFT_01629 are separated by 75 nucleotides H281DRAFT_01626: H281DRAFT_01626 - putative spermidine/putrescine transport system permease protein, at 505,254 to 506,180 _01626 H281DRAFT_01627: H281DRAFT_01627 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 506,180 to 507,067 _01627 H281DRAFT_01628: H281DRAFT_01628 - putative spermidine/putrescine transport system ATP-binding protein, at 507,064 to 508,143 _01628 H281DRAFT_01629: H281DRAFT_01629 - putative spermidine/putrescine transport system substrate-binding protein, at 508,219 to 509,388 _01629 Position (kb) 507 508 509Strain fitness (log2 ratio) -2 -1 0 1 2at 506.091 kb on + strandat 506.092 kb on - strandat 506.232 kb on - strandat 506.246 kb on + strandat 506.247 kb on - strandat 506.252 kb on + strandat 506.305 kb on - strand, within H281DRAFT_01627at 506.458 kb on - strand, within H281DRAFT_01627at 506.458 kb on - strand, within H281DRAFT_01627at 506.539 kb on - strand, within H281DRAFT_01627at 506.608 kb on + strand, within H281DRAFT_01627at 506.609 kb on - strand, within H281DRAFT_01627at 506.609 kb on - strandat 506.609 kb on - strand, within H281DRAFT_01627at 506.609 kb on - strand, within H281DRAFT_01627at 506.686 kb on - strand, within H281DRAFT_01627at 506.686 kb on - strand, within H281DRAFT_01627at 506.686 kb on - strand, within H281DRAFT_01627at 506.686 kb on - strand, within H281DRAFT_01627at 506.686 kb on - strand, within H281DRAFT_01627at 506.896 kb on - strand, within H281DRAFT_01627at 506.961 kb on + strand, within H281DRAFT_01627at 507.120 kb on + strandat 507.452 kb on + strand, within H281DRAFT_01628at 507.453 kb on - strand, within H281DRAFT_01628at 507.453 kb on - strand, within H281DRAFT_01628at 507.866 kb on + strand, within H281DRAFT_01628at 507.866 kb on + strand, within H281DRAFT_01628at 508.221 kb on - strandat 508.421 kb on + strand, within H281DRAFT_01629at 508.481 kb on + strand, within H281DRAFT_01629at 508.529 kb on + strand, within H281DRAFT_01629at 508.529 kb on + strand, within H281DRAFT_01629at 508.530 kb on - strand, within H281DRAFT_01629at 508.841 kb on + strand, within H281DRAFT_01629at 508.842 kb on - strand, within H281DRAFT_01629at 508.950 kb on + strand, within H281DRAFT_01629at 508.952 kb on + strand, within H281DRAFT_01629at 508.953 kb on - strand, within H281DRAFT_01629at 508.970 kb on + strand, within H281DRAFT_01629at 509.013 kb on - strand, within H281DRAFT_01629at 509.013 kb on - strand, within H281DRAFT_01629at 509.114 kb on - strand, within H281DRAFT_01629at 509.123 kb on - strand, within H281DRAFT_01629at 509.123 kb on - strand, within H281DRAFT_01629

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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506,091 + +0.6
506,092 - -1.5
506,232 - -0.5
506,246 + +0.2
506,247 - +0.7
506,252 + +0.6
506,305 - H281DRAFT_01627 0.14 -1.0
506,458 - H281DRAFT_01627 0.31 +0.4
506,458 - H281DRAFT_01627 0.31 +0.1
506,539 - H281DRAFT_01627 0.40 -0.0
506,608 + H281DRAFT_01627 0.48 +0.4
506,609 - H281DRAFT_01627 0.48 +1.2
506,609 - +1.8
506,609 - H281DRAFT_01627 0.48 +0.2
506,609 - H281DRAFT_01627 0.48 +0.9
506,686 - H281DRAFT_01627 0.57 +0.6
506,686 - H281DRAFT_01627 0.57 -0.5
506,686 - H281DRAFT_01627 0.57 -0.2
506,686 - H281DRAFT_01627 0.57 -0.1
506,686 - H281DRAFT_01627 0.57 -0.6
506,896 - H281DRAFT_01627 0.81 -0.3
506,961 + H281DRAFT_01627 0.88 +0.3
507,120 + -0.9
507,452 + H281DRAFT_01628 0.36 +0.7
507,453 - H281DRAFT_01628 0.36 -1.3
507,453 - H281DRAFT_01628 0.36 -0.1
507,866 + H281DRAFT_01628 0.74 +0.6
507,866 + H281DRAFT_01628 0.74 -2.7
508,221 - +0.1
508,421 + H281DRAFT_01629 0.17 +0.9
508,481 + H281DRAFT_01629 0.22 -0.1
508,529 + H281DRAFT_01629 0.26 +0.7
508,529 + H281DRAFT_01629 0.26 +0.7
508,530 - H281DRAFT_01629 0.27 +0.9
508,841 + H281DRAFT_01629 0.53 -2.3
508,842 - H281DRAFT_01629 0.53 -0.4
508,950 + H281DRAFT_01629 0.62 +0.6
508,952 + H281DRAFT_01629 0.63 -0.6
508,953 - H281DRAFT_01629 0.63 +0.9
508,970 + H281DRAFT_01629 0.64 +0.4
509,013 - H281DRAFT_01629 0.68 -0.6
509,013 - H281DRAFT_01629 0.68 -0.3
509,114 - H281DRAFT_01629 0.76 -0.4
509,123 - H281DRAFT_01629 0.77 +0.5
509,123 - H281DRAFT_01629 0.77 +0.6

Or see this region's nucleotide sequence