Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01505 and H281DRAFT_01506 are separated by 29 nucleotides H281DRAFT_01506 and H281DRAFT_01507 are separated by 78 nucleotides H281DRAFT_01507 and H281DRAFT_01508 are separated by 65 nucleotides H281DRAFT_01508 and H281DRAFT_01509 overlap by 4 nucleotides
H281DRAFT_01505: H281DRAFT_01505 - Nucleoside-diphosphate-sugar epimerase, at 375,264 to 376,244
_01505
H281DRAFT_01506: H281DRAFT_01506 - hydroxypyruvate isomerase, at 376,274 to 377,059
_01506
H281DRAFT_01507: H281DRAFT_01507 - D-galactonate transporter, at 377,138 to 378,472
_01507
H281DRAFT_01508: H281DRAFT_01508 - Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase, at 378,538 to 379,200
_01508
H281DRAFT_01509: H281DRAFT_01509 - Uncharacterized conserved protein YgbK, DUF1537 family, at 379,197 to 380,507
_01509
Position (kb) 377
378
379 Strain fitness (log2 ratio) -2
-1
0
1 at 376.264 kb on + strand at 376.265 kb on - strand at 376.290 kb on + strand at 376.354 kb on - strand, within H281DRAFT_01506 at 376.399 kb on - strand, within H281DRAFT_01506 at 376.522 kb on - strand, within H281DRAFT_01506 at 376.695 kb on + strand, within H281DRAFT_01506 at 377.174 kb on - strand at 377.587 kb on + strand, within H281DRAFT_01507 at 378.097 kb on - strand, within H281DRAFT_01507 at 378.097 kb on - strand, within H281DRAFT_01507 at 378.151 kb on + strand, within H281DRAFT_01507 at 378.152 kb on - strand, within H281DRAFT_01507 at 378.263 kb on + strand, within H281DRAFT_01507 at 378.345 kb on + strand at 378.495 kb on + strand at 378.815 kb on + strand, within H281DRAFT_01508 at 378.816 kb on - strand, within H281DRAFT_01508 at 378.816 kb on - strand, within H281DRAFT_01508 at 378.933 kb on - strand, within H281DRAFT_01508 at 378.933 kb on - strand, within H281DRAFT_01508 at 378.933 kb on - strand at 379.145 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 376,264 + +0.8 376,265 - -1.1 376,290 + +0.4 376,354 - H281DRAFT_01506 0.10 +0.3 376,399 - H281DRAFT_01506 0.16 +0.2 376,522 - H281DRAFT_01506 0.32 -0.1 376,695 + H281DRAFT_01506 0.54 +0.6 377,174 - -1.7 377,587 + H281DRAFT_01507 0.34 -1.2 378,097 - H281DRAFT_01507 0.72 -0.1 378,097 - H281DRAFT_01507 0.72 -0.7 378,151 + H281DRAFT_01507 0.76 -0.4 378,152 - H281DRAFT_01507 0.76 -0.1 378,263 + H281DRAFT_01507 0.84 +1.0 378,345 + -0.0 378,495 + -0.0 378,815 + H281DRAFT_01508 0.42 -0.7 378,816 - H281DRAFT_01508 0.42 -2.1 378,816 - H281DRAFT_01508 0.42 +0.3 378,933 - H281DRAFT_01508 0.60 -0.9 378,933 - H281DRAFT_01508 0.60 -0.7 378,933 - -0.1 379,145 - +0.0
Or see this region's nucleotide sequence