Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00838 and H281DRAFT_00839 are separated by 128 nucleotides H281DRAFT_00839 and H281DRAFT_00840 are separated by 209 nucleotides H281DRAFT_00840 and H281DRAFT_00841 overlap by 86 nucleotides
H281DRAFT_00838: H281DRAFT_00838 - NitT/TauT family transport system permease protein, at 928,074 to 928,898
_00838
H281DRAFT_00839: H281DRAFT_00839 - NADPH2:quinone reductase, at 929,027 to 930,001
_00839
H281DRAFT_00840: H281DRAFT_00840 - 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase, at 930,211 to 930,969
_00840
H281DRAFT_00841: H281DRAFT_00841 - hypothetical protein, at 930,884 to 931,456
_00841
Position (kb) 929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 928.042 kb on - strand at 928.047 kb on + strand at 928.047 kb on + strand at 928.048 kb on - strand at 928.058 kb on + strand at 928.059 kb on - strand at 928.155 kb on + strand at 928.284 kb on + strand, within H281DRAFT_00838 at 928.407 kb on + strand, within H281DRAFT_00838 at 928.408 kb on - strand, within H281DRAFT_00838 at 928.408 kb on - strand, within H281DRAFT_00838 at 928.408 kb on - strand, within H281DRAFT_00838 at 928.408 kb on - strand, within H281DRAFT_00838 at 928.539 kb on + strand, within H281DRAFT_00838 at 928.539 kb on + strand, within H281DRAFT_00838 at 928.667 kb on + strand, within H281DRAFT_00838 at 928.668 kb on - strand, within H281DRAFT_00838 at 928.711 kb on - strand, within H281DRAFT_00838 at 928.897 kb on - strand at 929.035 kb on + strand at 929.036 kb on - strand at 929.036 kb on - strand at 929.072 kb on - strand at 929.121 kb on + strand at 929.122 kb on - strand at 929.122 kb on - strand at 929.301 kb on + strand, within H281DRAFT_00839 at 929.341 kb on + strand, within H281DRAFT_00839 at 929.343 kb on + strand, within H281DRAFT_00839 at 929.343 kb on + strand, within H281DRAFT_00839 at 929.344 kb on - strand, within H281DRAFT_00839 at 929.365 kb on - strand, within H281DRAFT_00839 at 929.431 kb on - strand, within H281DRAFT_00839 at 929.564 kb on + strand, within H281DRAFT_00839 at 929.850 kb on + strand, within H281DRAFT_00839 at 929.850 kb on + strand, within H281DRAFT_00839 at 929.850 kb on + strand, within H281DRAFT_00839 at 929.850 kb on + strand, within H281DRAFT_00839 at 929.850 kb on + strand, within H281DRAFT_00839 at 929.952 kb on - strand at 929.952 kb on - strand at 929.977 kb on - strand at 930.043 kb on - strand at 930.061 kb on + strand at 930.062 kb on - strand at 930.067 kb on + strand at 930.068 kb on - strand at 930.068 kb on - strand at 930.200 kb on - strand at 930.221 kb on + strand at 930.222 kb on - strand at 930.242 kb on - strand at 930.242 kb on - strand at 930.269 kb on - strand at 930.392 kb on - strand, within H281DRAFT_00840 at 930.392 kb on - strand, within H281DRAFT_00840 at 930.394 kb on + strand, within H281DRAFT_00840 at 930.395 kb on - strand, within H281DRAFT_00840 at 930.514 kb on + strand, within H281DRAFT_00840 at 930.514 kb on + strand, within H281DRAFT_00840 at 930.514 kb on - strand, within H281DRAFT_00840 at 930.515 kb on - strand at 930.646 kb on + strand, within H281DRAFT_00840 at 930.729 kb on + strand, within H281DRAFT_00840 at 930.730 kb on - strand, within H281DRAFT_00840 at 930.780 kb on + strand, within H281DRAFT_00840 at 930.803 kb on - strand, within H281DRAFT_00840 at 930.803 kb on - strand, within H281DRAFT_00840 at 930.838 kb on - strand, within H281DRAFT_00840
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 928,042 - -1.0 928,047 + -0.3 928,047 + +0.4 928,048 - +0.3 928,058 + -1.5 928,059 - +0.1 928,155 + -0.8 928,284 + H281DRAFT_00838 0.25 +0.9 928,407 + H281DRAFT_00838 0.40 +0.2 928,408 - H281DRAFT_00838 0.40 -0.3 928,408 - H281DRAFT_00838 0.40 -3.7 928,408 - H281DRAFT_00838 0.40 -1.1 928,408 - H281DRAFT_00838 0.40 +0.1 928,539 + H281DRAFT_00838 0.56 -0.2 928,539 + H281DRAFT_00838 0.56 -0.8 928,667 + H281DRAFT_00838 0.72 -0.1 928,668 - H281DRAFT_00838 0.72 -0.0 928,711 - H281DRAFT_00838 0.77 +0.3 928,897 - +0.3 929,035 + +1.0 929,036 - +0.8 929,036 - +0.7 929,072 - -0.2 929,121 + -0.6 929,122 - +0.0 929,122 - +0.5 929,301 + H281DRAFT_00839 0.28 -0.9 929,341 + H281DRAFT_00839 0.32 -0.8 929,343 + H281DRAFT_00839 0.32 +0.8 929,343 + H281DRAFT_00839 0.32 -1.9 929,344 - H281DRAFT_00839 0.33 -0.8 929,365 - H281DRAFT_00839 0.35 +0.2 929,431 - H281DRAFT_00839 0.41 -0.1 929,564 + H281DRAFT_00839 0.55 -0.0 929,850 + H281DRAFT_00839 0.84 -0.5 929,850 + H281DRAFT_00839 0.84 +1.6 929,850 + H281DRAFT_00839 0.84 +1.4 929,850 + H281DRAFT_00839 0.84 +1.5 929,850 + H281DRAFT_00839 0.84 -0.1 929,952 - -3.3 929,952 - -0.0 929,977 - +0.5 930,043 - -0.2 930,061 + -1.7 930,062 - -0.6 930,067 + -1.1 930,068 - +0.1 930,068 - -0.3 930,200 - +0.5 930,221 + +0.6 930,222 - +0.2 930,242 - -1.1 930,242 - -0.7 930,269 - -0.6 930,392 - H281DRAFT_00840 0.24 -0.9 930,392 - H281DRAFT_00840 0.24 +0.5 930,394 + H281DRAFT_00840 0.24 -0.1 930,395 - H281DRAFT_00840 0.24 -2.1 930,514 + H281DRAFT_00840 0.40 +0.0 930,514 + H281DRAFT_00840 0.40 +0.6 930,514 - H281DRAFT_00840 0.40 -3.0 930,515 - -1.6 930,646 + H281DRAFT_00840 0.57 -0.0 930,729 + H281DRAFT_00840 0.68 -0.1 930,730 - H281DRAFT_00840 0.68 -2.0 930,780 + H281DRAFT_00840 0.75 -1.8 930,803 - H281DRAFT_00840 0.78 -2.5 930,803 - H281DRAFT_00840 0.78 +0.6 930,838 - H281DRAFT_00840 0.83 -0.5
Or see this region's nucleotide sequence