Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00154

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00153 and H281DRAFT_00154 are separated by 28 nucleotidesH281DRAFT_00154 and H281DRAFT_00155 are separated by 151 nucleotides H281DRAFT_00153: H281DRAFT_00153 - autotransporter secretion outer membrane protein TamA, at 157,219 to 158,979 _00153 H281DRAFT_00154: H281DRAFT_00154 - autotransporter secretion inner membrane protein TamB, at 159,008 to 163,381 _00154 H281DRAFT_00155: H281DRAFT_00155 - methionyl-tRNA synthetase, at 163,533 to 165,671 _00155 Position (kb) 159 160 161 162 163 164Strain fitness (log2 ratio) -2 -1 0 1at 158.039 kb on + strand, within H281DRAFT_00153at 158.047 kb on + strand, within H281DRAFT_00153at 158.053 kb on + strand, within H281DRAFT_00153at 158.053 kb on + strand, within H281DRAFT_00153at 158.053 kb on + strand, within H281DRAFT_00153at 158.054 kb on - strand, within H281DRAFT_00153at 158.123 kb on - strand, within H281DRAFT_00153at 158.123 kb on - strand, within H281DRAFT_00153at 158.123 kb on - strand, within H281DRAFT_00153at 158.130 kb on + strand, within H281DRAFT_00153at 158.130 kb on + strand, within H281DRAFT_00153at 158.131 kb on - strand, within H281DRAFT_00153at 158.238 kb on + strand, within H281DRAFT_00153at 158.239 kb on - strand, within H281DRAFT_00153at 158.255 kb on - strand, within H281DRAFT_00153at 158.283 kb on + strand, within H281DRAFT_00153at 158.288 kb on - strand, within H281DRAFT_00153at 158.338 kb on + strand, within H281DRAFT_00153at 158.344 kb on + strand, within H281DRAFT_00153at 158.344 kb on + strand, within H281DRAFT_00153at 158.344 kb on + strand, within H281DRAFT_00153at 158.344 kb on + strand, within H281DRAFT_00153at 158.344 kb on + strand, within H281DRAFT_00153at 158.345 kb on - strand, within H281DRAFT_00153at 158.345 kb on - strand, within H281DRAFT_00153at 158.345 kb on - strand, within H281DRAFT_00153at 158.345 kb on - strand, within H281DRAFT_00153at 158.345 kb on - strand, within H281DRAFT_00153at 158.345 kb on - strand, within H281DRAFT_00153at 158.359 kb on + strand, within H281DRAFT_00153at 158.360 kb on - strand, within H281DRAFT_00153at 158.504 kb on + strand, within H281DRAFT_00153at 158.505 kb on - strand, within H281DRAFT_00153at 158.615 kb on + strand, within H281DRAFT_00153at 158.616 kb on - strand, within H281DRAFT_00153at 158.698 kb on + strand, within H281DRAFT_00153at 158.712 kb on + strand, within H281DRAFT_00153at 158.713 kb on - strand, within H281DRAFT_00153at 158.746 kb on + strand, within H281DRAFT_00153at 158.746 kb on + strand, within H281DRAFT_00153at 158.746 kb on + strand, within H281DRAFT_00153at 158.746 kb on + strand, within H281DRAFT_00153at 158.746 kb on + strand, within H281DRAFT_00153at 158.747 kb on - strand, within H281DRAFT_00153at 158.747 kb on - strand, within H281DRAFT_00153at 158.747 kb on - strand, within H281DRAFT_00153at 158.747 kb on - strand, within H281DRAFT_00153at 158.771 kb on - strand, within H281DRAFT_00153at 158.771 kb on - strand, within H281DRAFT_00153at 158.771 kb on - strand, within H281DRAFT_00153at 158.771 kb on - strand, within H281DRAFT_00153at 158.771 kb on - strand, within H281DRAFT_00153at 158.924 kb on - strandat 158.994 kb on + strandat 159.239 kb on + strandat 159.239 kb on + strandat 159.239 kb on + strandat 159.239 kb on + strandat 159.382 kb on + strandat 159.383 kb on - strandat 159.383 kb on - strandat 159.434 kb on + strandat 159.448 kb on + strand, within H281DRAFT_00154at 159.735 kb on + strand, within H281DRAFT_00154at 159.735 kb on + strandat 159.735 kb on + strand, within H281DRAFT_00154at 159.736 kb on - strand, within H281DRAFT_00154at 159.741 kb on - strand, within H281DRAFT_00154at 159.769 kb on - strand, within H281DRAFT_00154at 160.183 kb on + strand, within H281DRAFT_00154at 160.561 kb on + strand, within H281DRAFT_00154at 160.561 kb on + strand, within H281DRAFT_00154at 160.562 kb on - strand, within H281DRAFT_00154at 160.562 kb on - strand, within H281DRAFT_00154at 160.625 kb on + strand, within H281DRAFT_00154at 160.626 kb on - strand, within H281DRAFT_00154at 161.255 kb on + strand, within H281DRAFT_00154at 161.413 kb on - strand, within H281DRAFT_00154at 161.803 kb on - strand, within H281DRAFT_00154at 162.140 kb on + strand, within H281DRAFT_00154at 162.141 kb on - strand, within H281DRAFT_00154at 162.199 kb on + strand, within H281DRAFT_00154at 162.279 kb on + strand, within H281DRAFT_00154at 162.279 kb on + strand, within H281DRAFT_00154at 162.279 kb on + strand, within H281DRAFT_00154at 162.445 kb on + strand, within H281DRAFT_00154at 162.445 kb on + strand, within H281DRAFT_00154at 162.446 kb on - strand, within H281DRAFT_00154at 162.446 kb on - strand, within H281DRAFT_00154at 162.647 kb on - strand, within H281DRAFT_00154at 162.821 kb on + strand, within H281DRAFT_00154at 162.821 kb on + strand, within H281DRAFT_00154at 162.821 kb on + strand, within H281DRAFT_00154at 162.839 kb on - strand, within H281DRAFT_00154at 163.239 kb on - strandat 163.239 kb on - strandat 163.298 kb on + strandat 163.298 kb on + strandat 163.347 kb on + strandat 163.348 kb on - strandat 163.349 kb on + strandat 163.349 kb on + strandat 163.349 kb on + strandat 163.350 kb on - strandat 163.464 kb on + strandat 163.492 kb on + strandat 163.515 kb on + strandat 163.516 kb on - strandat 163.516 kb on - strandat 163.519 kb on + strandat 163.520 kb on - strandat 163.520 kb on - strandat 163.520 kb on - strandat 163.534 kb on + strandat 163.534 kb on + strandat 163.771 kb on - strand, within H281DRAFT_00155

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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158,039 + H281DRAFT_00153 0.47 -0.3
158,047 + H281DRAFT_00153 0.47 -0.1
158,053 + H281DRAFT_00153 0.47 -0.1
158,053 + H281DRAFT_00153 0.47 -0.2
158,053 + H281DRAFT_00153 0.47 +0.1
158,054 - H281DRAFT_00153 0.47 +0.4
158,123 - H281DRAFT_00153 0.51 -0.3
158,123 - H281DRAFT_00153 0.51 +0.3
158,123 - H281DRAFT_00153 0.51 -0.1
158,130 + H281DRAFT_00153 0.52 -0.2
158,130 + H281DRAFT_00153 0.52 -0.0
158,131 - H281DRAFT_00153 0.52 +0.5
158,238 + H281DRAFT_00153 0.58 -0.6
158,239 - H281DRAFT_00153 0.58 +0.3
158,255 - H281DRAFT_00153 0.59 -0.3
158,283 + H281DRAFT_00153 0.60 +0.2
158,288 - H281DRAFT_00153 0.61 +0.3
158,338 + H281DRAFT_00153 0.64 +0.5
158,344 + H281DRAFT_00153 0.64 -0.1
158,344 + H281DRAFT_00153 0.64 +0.8
158,344 + H281DRAFT_00153 0.64 -0.5
158,344 + H281DRAFT_00153 0.64 -0.2
158,344 + H281DRAFT_00153 0.64 +0.2
158,345 - H281DRAFT_00153 0.64 -0.6
158,345 - H281DRAFT_00153 0.64 +0.2
158,345 - H281DRAFT_00153 0.64 +1.6
158,345 - H281DRAFT_00153 0.64 -0.1
158,345 - H281DRAFT_00153 0.64 -0.2
158,345 - H281DRAFT_00153 0.64 +0.4
158,359 + H281DRAFT_00153 0.65 +1.2
158,360 - H281DRAFT_00153 0.65 -0.0
158,504 + H281DRAFT_00153 0.73 +0.5
158,505 - H281DRAFT_00153 0.73 +0.5
158,615 + H281DRAFT_00153 0.79 +0.8
158,616 - H281DRAFT_00153 0.79 +0.2
158,698 + H281DRAFT_00153 0.84 -1.3
158,712 + H281DRAFT_00153 0.85 +0.5
158,713 - H281DRAFT_00153 0.85 +0.1
158,746 + H281DRAFT_00153 0.87 +1.1
158,746 + H281DRAFT_00153 0.87 +0.3
158,746 + H281DRAFT_00153 0.87 -0.2
158,746 + H281DRAFT_00153 0.87 +0.1
158,746 + H281DRAFT_00153 0.87 +0.3
158,747 - H281DRAFT_00153 0.87 +0.4
158,747 - H281DRAFT_00153 0.87 -0.4
158,747 - H281DRAFT_00153 0.87 +0.4
158,747 - H281DRAFT_00153 0.87 -0.7
158,771 - H281DRAFT_00153 0.88 +0.5
158,771 - H281DRAFT_00153 0.88 +1.2
158,771 - H281DRAFT_00153 0.88 +0.6
158,771 - H281DRAFT_00153 0.88 -0.1
158,771 - H281DRAFT_00153 0.88 +1.0
158,924 - -0.4
158,994 + +1.0
159,239 + +1.3
159,239 + +0.7
159,239 + -0.1
159,239 + +0.9
159,382 + +0.3
159,383 - +0.3
159,383 - -0.2
159,434 + -0.3
159,448 + H281DRAFT_00154 0.10 +0.0
159,735 + H281DRAFT_00154 0.17 +0.7
159,735 + -0.2
159,735 + H281DRAFT_00154 0.17 +1.0
159,736 - H281DRAFT_00154 0.17 +0.4
159,741 - H281DRAFT_00154 0.17 -0.4
159,769 - H281DRAFT_00154 0.17 -1.3
160,183 + H281DRAFT_00154 0.27 +0.1
160,561 + H281DRAFT_00154 0.36 +0.1
160,561 + H281DRAFT_00154 0.36 -1.1
160,562 - H281DRAFT_00154 0.36 +0.7
160,562 - H281DRAFT_00154 0.36 -0.2
160,625 + H281DRAFT_00154 0.37 +0.2
160,626 - H281DRAFT_00154 0.37 +0.7
161,255 + H281DRAFT_00154 0.51 +0.3
161,413 - H281DRAFT_00154 0.55 -1.8
161,803 - H281DRAFT_00154 0.64 +0.5
162,140 + H281DRAFT_00154 0.72 +0.0
162,141 - H281DRAFT_00154 0.72 +0.6
162,199 + H281DRAFT_00154 0.73 -0.1
162,279 + H281DRAFT_00154 0.75 +0.6
162,279 + H281DRAFT_00154 0.75 +1.1
162,279 + H281DRAFT_00154 0.75 -1.4
162,445 + H281DRAFT_00154 0.79 +0.2
162,445 + H281DRAFT_00154 0.79 +0.2
162,446 - H281DRAFT_00154 0.79 +0.5
162,446 - H281DRAFT_00154 0.79 -2.5
162,647 - H281DRAFT_00154 0.83 +0.1
162,821 + H281DRAFT_00154 0.87 +0.2
162,821 + H281DRAFT_00154 0.87 -0.1
162,821 + H281DRAFT_00154 0.87 +0.7
162,839 - H281DRAFT_00154 0.88 +0.7
163,239 - -1.1
163,239 - +1.4
163,298 + -2.1
163,298 + +0.8
163,347 + -0.1
163,348 - -0.0
163,349 + -0.1
163,349 + +1.1
163,349 + -0.2
163,350 - +0.6
163,464 + -0.9
163,492 + +1.5
163,515 + +0.2
163,516 - +0.7
163,516 - +0.9
163,519 + -0.4
163,520 - +1.3
163,520 - -0.2
163,520 - +1.6
163,534 + +0.4
163,534 + -0.1
163,771 - H281DRAFT_00155 0.11 -2.5

Or see this region's nucleotide sequence