Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00103

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00102 and H281DRAFT_00103 are separated by 348 nucleotidesH281DRAFT_00103 and H281DRAFT_00104 are separated by 3 nucleotides H281DRAFT_00102: H281DRAFT_00102 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 106,244 to 106,897 _00102 H281DRAFT_00103: H281DRAFT_00103 - transcriptional regulator, LacI family, at 107,246 to 108,334 _00103 H281DRAFT_00104: H281DRAFT_00104 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 108,338 to 109,825 _00104 Position (kb) 107 108 109Strain fitness (log2 ratio) -2 -1 0 1at 106.468 kb on - strand, within H281DRAFT_00102at 106.630 kb on - strand, within H281DRAFT_00102at 107.028 kb on - strandat 107.028 kb on - strandat 107.165 kb on - strandat 107.804 kb on + strand, within H281DRAFT_00103at 107.804 kb on + strand, within H281DRAFT_00103at 107.804 kb on + strand, within H281DRAFT_00103at 107.804 kb on + strand, within H281DRAFT_00103at 107.805 kb on - strand, within H281DRAFT_00103at 107.904 kb on - strand, within H281DRAFT_00103at 107.933 kb on + strand, within H281DRAFT_00103at 107.934 kb on - strand, within H281DRAFT_00103at 108.005 kb on + strand, within H281DRAFT_00103at 108.006 kb on - strand, within H281DRAFT_00103at 108.435 kb on - strandat 108.638 kb on + strand, within H281DRAFT_00104at 108.639 kb on - strand, within H281DRAFT_00104at 108.639 kb on - strand, within H281DRAFT_00104at 108.921 kb on - strand, within H281DRAFT_00104at 109.334 kb on + strand, within H281DRAFT_00104

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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106,468 - H281DRAFT_00102 0.34 -1.0
106,630 - H281DRAFT_00102 0.59 +0.3
107,028 - -0.2
107,028 - -0.3
107,165 - -0.3
107,804 + H281DRAFT_00103 0.51 -2.0
107,804 + H281DRAFT_00103 0.51 +0.4
107,804 + H281DRAFT_00103 0.51 +0.6
107,804 + H281DRAFT_00103 0.51 +0.4
107,805 - H281DRAFT_00103 0.51 -1.6
107,904 - H281DRAFT_00103 0.60 +0.3
107,933 + H281DRAFT_00103 0.63 +1.2
107,934 - H281DRAFT_00103 0.63 +0.1
108,005 + H281DRAFT_00103 0.70 +0.8
108,006 - H281DRAFT_00103 0.70 +0.1
108,435 - -0.3
108,638 + H281DRAFT_00104 0.20 +0.2
108,639 - H281DRAFT_00104 0.20 -0.0
108,639 - H281DRAFT_00104 0.20 -0.2
108,921 - H281DRAFT_00104 0.39 -0.5
109,334 + H281DRAFT_00104 0.67 -1.9

Or see this region's nucleotide sequence