Experiment: Pyruvate-Sulfite (60-20mM) with Aluminum 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hpt and DVU1589 are separated by 30 nucleotides DVU1589 and radA are separated by 12 nucleotides radA and DVU1591 are separated by 102 nucleotides DVU1591 and DVU1592 are separated by 82 nucleotides
DVU1588: hpt - hypoxanthine phosphoribosyltransferase (TIGR), at 1,670,936 to 1,671,466
hpt
DVU1589: DVU1589 - hypothetical protein (TIGR), at 1,671,497 to 1,672,285
DVU1589
DVU1590: radA - DNA repair protein RadA (TIGR), at 1,672,298 to 1,673,668
radA
DVU1591: DVU1591 - hypothetical protein (TIGR), at 1,673,771 to 1,673,902
DVU1591
DVU1592: DVU1592 - arginine N-succinyltransferase, beta subunit, putative (TIGR), at 1,673,985 to 1,675,727
DVU1592
Position (kb)
1672
1673
1674 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1671.419 kb on - strand at 1671.527 kb on + strand at 1671.571 kb on - strand at 1671.595 kb on + strand, within DVU1589 at 1671.712 kb on - strand, within DVU1589 at 1671.848 kb on + strand, within DVU1589 at 1671.919 kb on + strand, within DVU1589 at 1671.966 kb on + strand, within DVU1589 at 1672.063 kb on + strand, within DVU1589 at 1672.071 kb on + strand, within DVU1589 at 1672.101 kb on - strand, within DVU1589 at 1672.241 kb on - strand at 1672.553 kb on - strand, within radA at 1672.566 kb on + strand, within radA at 1672.690 kb on + strand, within radA at 1672.690 kb on + strand, within radA at 1672.698 kb on - strand, within radA at 1672.698 kb on - strand, within radA at 1672.794 kb on + strand, within radA at 1672.820 kb on + strand, within radA at 1672.873 kb on + strand, within radA at 1673.120 kb on - strand, within radA at 1673.407 kb on - strand, within radA at 1673.468 kb on + strand, within radA at 1673.658 kb on - strand at 1673.721 kb on + strand at 1673.723 kb on + strand at 1673.729 kb on - strand at 1673.729 kb on - strand at 1673.739 kb on - strand at 1673.779 kb on - strand at 1673.784 kb on - strand at 1673.874 kb on + strand, within DVU1591 at 1673.981 kb on + strand at 1674.055 kb on - strand at 1674.144 kb on + strand at 1674.233 kb on - strand, within DVU1592 at 1674.266 kb on - strand, within DVU1592 at 1674.348 kb on - strand, within DVU1592 at 1674.376 kb on - strand, within DVU1592 at 1674.376 kb on - strand, within DVU1592 at 1674.469 kb on + strand, within DVU1592 at 1674.497 kb on - strand, within DVU1592 at 1674.523 kb on + strand, within DVU1592
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Aluminum 1mM remove 1,671,419 - -0.1 1,671,527 + -0.4 1,671,571 - -0.3 1,671,595 + DVU1589 0.12 -0.2 1,671,712 - DVU1589 0.27 -2.0 1,671,848 + DVU1589 0.44 -0.1 1,671,919 + DVU1589 0.53 -2.0 1,671,966 + DVU1589 0.59 -0.3 1,672,063 + DVU1589 0.72 -0.6 1,672,071 + DVU1589 0.73 +0.8 1,672,101 - DVU1589 0.77 +0.3 1,672,241 - +1.5 1,672,553 - radA DVU1590 0.19 -1.2 1,672,566 + radA DVU1590 0.20 +0.1 1,672,690 + radA DVU1590 0.29 -5.1 1,672,690 + radA DVU1590 0.29 -0.1 1,672,698 - radA DVU1590 0.29 +1.5 1,672,698 - radA DVU1590 0.29 +0.3 1,672,794 + radA DVU1590 0.36 -1.0 1,672,820 + radA DVU1590 0.38 -0.1 1,672,873 + radA DVU1590 0.42 -0.1 1,673,120 - radA DVU1590 0.60 -0.1 1,673,407 - radA DVU1590 0.81 +0.2 1,673,468 + radA DVU1590 0.85 -2.1 1,673,658 - -0.7 1,673,721 + +1.8 1,673,723 + -0.7 1,673,729 - -0.1 1,673,729 - -0.1 1,673,739 - -2.3 1,673,779 - +0.1 1,673,784 - +1.0 1,673,874 + DVU1591 0.78 +1.7 1,673,981 + -2.9 1,674,055 - +0.2 1,674,144 + +0.2 1,674,233 - DVU1592 0.14 -0.7 1,674,266 - DVU1592 0.16 +0.0 1,674,348 - DVU1592 0.21 -0.3 1,674,376 - DVU1592 0.22 -0.1 1,674,376 - DVU1592 0.22 -0.5 1,674,469 + DVU1592 0.28 +0.0 1,674,497 - DVU1592 0.29 -0.0 1,674,523 + DVU1592 0.31 -0.1
Or see this region's nucleotide sequence