Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1590

Experiment: Pyruvate-Sulfite (60-20mM) with Aluminum 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthpt and DVU1589 are separated by 30 nucleotidesDVU1589 and radA are separated by 12 nucleotidesradA and DVU1591 are separated by 102 nucleotidesDVU1591 and DVU1592 are separated by 82 nucleotides DVU1588: hpt - hypoxanthine phosphoribosyltransferase (TIGR), at 1,670,936 to 1,671,466 hpt DVU1589: DVU1589 - hypothetical protein (TIGR), at 1,671,497 to 1,672,285 DVU1589 DVU1590: radA - DNA repair protein RadA (TIGR), at 1,672,298 to 1,673,668 radA DVU1591: DVU1591 - hypothetical protein (TIGR), at 1,673,771 to 1,673,902 DVU1591 DVU1592: DVU1592 - arginine N-succinyltransferase, beta subunit, putative (TIGR), at 1,673,985 to 1,675,727 DVU1592 Position (kb) 1672 1673 1674Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1671.419 kb on - strandat 1671.527 kb on + strandat 1671.571 kb on - strandat 1671.595 kb on + strand, within DVU1589at 1671.712 kb on - strand, within DVU1589at 1671.848 kb on + strand, within DVU1589at 1671.919 kb on + strand, within DVU1589at 1671.966 kb on + strand, within DVU1589at 1672.063 kb on + strand, within DVU1589at 1672.071 kb on + strand, within DVU1589at 1672.101 kb on - strand, within DVU1589at 1672.241 kb on - strandat 1672.553 kb on - strand, within radAat 1672.566 kb on + strand, within radAat 1672.690 kb on + strand, within radAat 1672.690 kb on + strand, within radAat 1672.698 kb on - strand, within radAat 1672.698 kb on - strand, within radAat 1672.794 kb on + strand, within radAat 1672.820 kb on + strand, within radAat 1672.873 kb on + strand, within radAat 1673.120 kb on - strand, within radAat 1673.407 kb on - strand, within radAat 1673.468 kb on + strand, within radAat 1673.658 kb on - strandat 1673.721 kb on + strandat 1673.723 kb on + strandat 1673.729 kb on - strandat 1673.729 kb on - strandat 1673.739 kb on - strandat 1673.779 kb on - strandat 1673.784 kb on - strandat 1673.874 kb on + strand, within DVU1591at 1673.981 kb on + strandat 1674.055 kb on - strandat 1674.144 kb on + strandat 1674.233 kb on - strand, within DVU1592at 1674.266 kb on - strand, within DVU1592at 1674.348 kb on - strand, within DVU1592at 1674.376 kb on - strand, within DVU1592at 1674.376 kb on - strand, within DVU1592at 1674.469 kb on + strand, within DVU1592at 1674.497 kb on - strand, within DVU1592at 1674.523 kb on + strand, within DVU1592

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Aluminum 1mM
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1,671,419 - -0.1
1,671,527 + -0.4
1,671,571 - -0.3
1,671,595 + DVU1589 0.12 -0.2
1,671,712 - DVU1589 0.27 -2.0
1,671,848 + DVU1589 0.44 -0.1
1,671,919 + DVU1589 0.53 -2.0
1,671,966 + DVU1589 0.59 -0.3
1,672,063 + DVU1589 0.72 -0.6
1,672,071 + DVU1589 0.73 +0.8
1,672,101 - DVU1589 0.77 +0.3
1,672,241 - +1.5
1,672,553 - radA DVU1590 0.19 -1.2
1,672,566 + radA DVU1590 0.20 +0.1
1,672,690 + radA DVU1590 0.29 -5.1
1,672,690 + radA DVU1590 0.29 -0.1
1,672,698 - radA DVU1590 0.29 +1.5
1,672,698 - radA DVU1590 0.29 +0.3
1,672,794 + radA DVU1590 0.36 -1.0
1,672,820 + radA DVU1590 0.38 -0.1
1,672,873 + radA DVU1590 0.42 -0.1
1,673,120 - radA DVU1590 0.60 -0.1
1,673,407 - radA DVU1590 0.81 +0.2
1,673,468 + radA DVU1590 0.85 -2.1
1,673,658 - -0.7
1,673,721 + +1.8
1,673,723 + -0.7
1,673,729 - -0.1
1,673,729 - -0.1
1,673,739 - -2.3
1,673,779 - +0.1
1,673,784 - +1.0
1,673,874 + DVU1591 0.78 +1.7
1,673,981 + -2.9
1,674,055 - +0.2
1,674,144 + +0.2
1,674,233 - DVU1592 0.14 -0.7
1,674,266 - DVU1592 0.16 +0.0
1,674,348 - DVU1592 0.21 -0.3
1,674,376 - DVU1592 0.22 -0.1
1,674,376 - DVU1592 0.22 -0.5
1,674,469 + DVU1592 0.28 +0.0
1,674,497 - DVU1592 0.29 -0.0
1,674,523 + DVU1592 0.31 -0.1

Or see this region's nucleotide sequence